BLASTX nr result
ID: Coptis21_contig00038405
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00038405
(257 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001008804.1| Ubiquitin family protein [Tetrahymena thermo... 69 3e-10
ref|NP_568552.1| polyubiquitin 9 [Arabidopsis thaliana] gi|75170... 69 3e-10
ref|NP_566357.1| polyubiquitin 8 [Arabidopsis thaliana] gi|75101... 68 7e-10
dbj|BAK04737.1| predicted protein [Hordeum vulgare subsp. vulgare] 68 9e-10
ref|XP_003386183.1| PREDICTED: polyubiquitin-like [Amphimedon qu... 67 2e-09
>ref|XP_001008804.1| Ubiquitin family protein [Tetrahymena thermophila]
gi|89290571|gb|EAR88559.1| Ubiquitin family protein
[Tetrahymena thermophila SB210]
Length = 564
Score = 69.3 bits (168), Expect = 3e-10
Identities = 30/54 (55%), Positives = 42/54 (77%)
Frame = -1
Query: 251 SSDTTKDVKEMVNQIQGIHPKQQRILFNGRILEDSRTLGDYNVEDGSTIHLMLC 90
SSDT ++K + I+GI P QQR++F G+ILE+ TL DYN+++GSTIHL+LC
Sbjct: 302 SSDTIDNIKNKIYDIEGIPPDQQRLIFPGKILENGYTLSDYNIQNGSTIHLVLC 355
>ref|NP_568552.1| polyubiquitin 9 [Arabidopsis thaliana]
gi|75170661|sp|Q9FHQ6.1|UBQ9_ARATH RecName:
Full=Polyubiquitin 9; Contains: RecName:
Full=Ubiquitin-related 1; Contains: RecName:
Full=Ubiquitin-related 2; Contains: RecName:
Full=Ubiquitin-related 3; Contains: RecName:
Full=Ubiquitin-related 4; Flags: Precursor
gi|9757974|dbj|BAB08310.1| polyubiquitin [Arabidopsis
thaliana] gi|332006830|gb|AED94213.1| polyubiquitin 9
[Arabidopsis thaliana]
Length = 322
Score = 69.3 bits (168), Expect = 3e-10
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = -1
Query: 257 VLSSDTTKDVKEMVNQIQGIHPKQQRILFNGRILEDSRTLGDYNVEDGSTIHLMLCICG 81
V SSDTT +VK + +GI P QQR++F G+ LED RTL DYN++ ST+HL+L +CG
Sbjct: 171 VESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLCG 229
Score = 60.8 bits (146), Expect = 1e-07
Identities = 28/59 (47%), Positives = 41/59 (69%)
Frame = -1
Query: 257 VLSSDTTKDVKEMVNQIQGIHPKQQRILFNGRILEDSRTLGDYNVEDGSTIHLMLCICG 81
V SSDT +VK + +G+ P QQR++F G+ L+D RTL DYN++ ST+HL+L + G
Sbjct: 95 VESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLVLRLRG 153
Score = 60.5 bits (145), Expect = 1e-07
Identities = 27/59 (45%), Positives = 42/59 (71%)
Frame = -1
Query: 257 VLSSDTTKDVKEMVNQIQGIHPKQQRILFNGRILEDSRTLGDYNVEDGSTIHLMLCICG 81
V+SSDT +VK + I+GI QQR++F+G++L+D RTL DY+++ S +HL L + G
Sbjct: 19 VVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLADYSIQKDSILHLALRLRG 77
>ref|NP_566357.1| polyubiquitin 8 [Arabidopsis thaliana]
gi|75101960|sp|Q39256.1|UBQ8_ARATH RecName:
Full=Polyubiquitin 8; Contains: RecName:
Full=Ubiquitin-related 1; Contains: RecName:
Full=Ubiquitin-related 2; Contains: RecName:
Full=Ubiquitin-related 3; Contains: RecName:
Full=Ubiquitin-related 4; Contains: RecName:
Full=Ubiquitin-related 5; Contains: RecName:
Full=Ubiquitin-related 6; Contains: RecName:
Full=Ubiquitin-related 7; Contains: RecName:
Full=Ubiquitin-related 8; Flags: Precursor
gi|6681339|gb|AAF23256.1|AC015985_14 polyubiquitin
(ubq8) [Arabidopsis thaliana]
gi|6682255|gb|AAF23307.1|AC016661_32 polyubiquitin
[Arabidopsis thaliana] gi|870794|gb|AAA68879.1|
polyubiquitin [Arabidopsis thaliana]
gi|332641292|gb|AEE74813.1| polyubiquitin 8 [Arabidopsis
thaliana]
Length = 631
Score = 68.2 bits (165), Expect = 7e-10
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = -1
Query: 257 VLSSDTTKDVKEMVNQIQGIHPKQQRILFNGRILEDSRTLGDYNVEDGSTIHLMLCICG 81
V SSDT +VK + +GI P+QQR++F G+ LED RTL DYN++ ST+HL+L +CG
Sbjct: 95 VKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLCG 153
Score = 58.9 bits (141), Expect = 4e-07
Identities = 30/57 (52%), Positives = 36/57 (63%)
Frame = -1
Query: 257 VLSSDTTKDVKEMVNQIQGIHPKQQRILFNGRILEDSRTLGDYNVEDGSTIHLMLCI 87
VLSSDT K VK + G P QQ +LF G L+D RTLGDYN+ + ST+HL I
Sbjct: 409 VLSSDTIKSVKAKIQDKVGSPPDQQILLFRGGQLQDGRTLGDYNIRNESTLHLFFHI 465
Score = 54.7 bits (130), Expect = 8e-06
Identities = 27/55 (49%), Positives = 38/55 (69%)
Frame = -1
Query: 257 VLSSDTTKDVKEMVNQIQGIHPKQQRILFNGRILEDSRTLGDYNVEDGSTIHLML 93
V SSDT +VKE + +GI P QQ ++F G+ LED TLGDY++ ST++L+L
Sbjct: 568 VESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGVTLGDYDIHKKSTLYLVL 622
>dbj|BAK04737.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 131
Score = 67.8 bits (164), Expect = 9e-10
Identities = 33/68 (48%), Positives = 47/68 (69%)
Frame = -1
Query: 257 VLSSDTTKDVKEMVNQIQGIHPKQQRILFNGRILEDSRTLGDYNVEDGSTIHLMLCICGC 78
V+SSDT +VK + +GIHP QQR++F G+ L+D RTL DYN++ STIHL+L + G
Sbjct: 17 VVSSDTIDNVKAKIQDKEGIHPDQQRLIFAGKQLDDDRTLADYNIQKESTIHLVLRLRGG 76
Query: 77 *IMISFNV 54
+I N+
Sbjct: 77 ACLIEPNL 84
>ref|XP_003386183.1| PREDICTED: polyubiquitin-like [Amphimedon queenslandica]
Length = 968
Score = 66.6 bits (161), Expect = 2e-09
Identities = 29/53 (54%), Positives = 40/53 (75%)
Frame = -1
Query: 248 SDTTKDVKEMVNQIQGIHPKQQRILFNGRILEDSRTLGDYNVEDGSTIHLMLC 90
SDT ++VK + +GI P QQR++F G+ILED RTL DYN++ ST+HL+LC
Sbjct: 172 SDTIENVKAKIQDKEGIPPDQQRLIFAGKILEDGRTLSDYNIQKESTLHLVLC 224
Score = 62.8 bits (151), Expect = 3e-08
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = -1
Query: 257 VLSSDTTKDVKEMVNQIQGIHPKQQRILFNGRILEDSRTLGDYNVEDGSTIHLMLCICG 81
V +SDT + VKE + +GI P QQR++F G+ LE+ RTL DYN+++ ST+HL+L + G
Sbjct: 17 VEASDTVESVKEKIQDKEGIPPDQQRLIFVGKQLENGRTLSDYNIQNESTLHLVLRLRG 75
Score = 61.2 bits (147), Expect = 8e-08
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = -1
Query: 248 SDTTKDVKEMVNQIQGIHPKQQRILFNGRILEDSRTLGDYNVEDGSTIHLML 93
SDT +++K + +GI P QQR++F GR LED RTL DYN++ ST+HL+L
Sbjct: 96 SDTMENIKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQKESTLHLVL 147