BLASTX nr result
ID: Coptis21_contig00038295
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00038295
(444 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI37746.3| unnamed protein product [Vitis vinifera] 161 6e-38
ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containi... 161 6e-38
emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera] 157 1e-36
ref|XP_002886104.1| pentatricopeptide repeat-containing protein ... 152 4e-35
ref|XP_002520932.1| pentatricopeptide repeat-containing protein,... 151 6e-35
>emb|CBI37746.3| unnamed protein product [Vitis vinifera]
Length = 2090
Score = 161 bits (407), Expect = 6e-38
Identities = 82/143 (57%), Positives = 100/143 (69%)
Frame = +1
Query: 16 SVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEMLSG 195
SVQNSLL Y++ +E +LFDEM RDV+SWSVMI YVQ+GE EM S
Sbjct: 172 SVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSN 230
Query: 196 NGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDADS 375
+E D +T+VS+LKACA D+ GR+VH VICRG D FVGNS++DMYSKC D +S
Sbjct: 231 ASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHES 290
Query: 376 AFKIFNEMPQKNIVSWNSVLSGL 444
AFK FNEMP +N VSWNS++SGL
Sbjct: 291 AFKAFNEMPCRNTVSWNSIISGL 313
Score = 91.3 bits (225), Expect = 8e-17
Identities = 48/143 (33%), Positives = 82/143 (57%)
Frame = +1
Query: 10 NISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEML 189
N V NSL+ YS+ +E KLFD + +D VSWS MI + G+ +EM
Sbjct: 372 NEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMN 431
Query: 190 SGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDA 369
+P+ +T++S+L+A + D+ + H I RG ++ VG +++DMY+KC +
Sbjct: 432 QAQE-KPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEI 490
Query: 370 DSAFKIFNEMPQKNIVSWNSVLS 438
+ K F+++P+KNIVSW ++++
Sbjct: 491 GLSRKAFDQIPEKNIVSWGAMIA 513
Score = 86.7 bits (213), Expect = 2e-15
Identities = 48/144 (33%), Positives = 82/144 (56%)
Frame = +1
Query: 10 NISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEML 189
++ V NS++ YS+ E K F+EMP R+ VSW+ +I V++ + M
Sbjct: 271 DLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMG 330
Query: 190 SGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDA 369
G DE+T+V++L++C D + +H VI G+ + FV NSL+D YSKC
Sbjct: 331 KA-GFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLI 389
Query: 370 DSAFKIFNEMPQKNIVSWNSVLSG 441
+ A+K+F+ + K+ VSW+++++G
Sbjct: 390 ELAWKLFDRLKTKDTVSWSAMIAG 413
Score = 78.2 bits (191), Expect = 7e-13
Identities = 45/142 (31%), Positives = 77/142 (54%)
Frame = +1
Query: 16 SVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEMLSG 195
S NS+L FY + G L+ +FD M RD VSW++MI ++ G ++
Sbjct: 71 STGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQ-ARV 129
Query: 196 NGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDADS 375
EP+ T+V + AC + ++ G +H Y+I GF V NSL+ MY+ D +
Sbjct: 130 IAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMER 188
Query: 376 AFKIFNEMPQKNIVSWNSVLSG 441
A ++F+EM +++++SW+ ++ G
Sbjct: 189 AEELFDEMCERDVISWSVMIGG 210
Score = 62.4 bits (150), Expect = 4e-08
Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Frame = +1
Query: 1 LLANISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXK 180
L A ++V ++L Y++ G + RK FD++P +++VSW MI A +G
Sbjct: 470 LAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLS 529
Query: 181 EMLSGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVI-CRGFRSDTFVGNSLVDMYSK 357
EM +G++P+ +T +S+L AC+ V+ G + ++ G + +VDM S+
Sbjct: 530 EM-KLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSR 588
Query: 358 CIDADSAFKIFNEMPQK---NIVSWNSVLS 438
+SA + +MP++ W ++LS
Sbjct: 589 AGKLNSAMNLIEKMPERMRDGAGLWGALLS 618
>ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Vitis vinifera]
Length = 742
Score = 161 bits (407), Expect = 6e-38
Identities = 82/143 (57%), Positives = 100/143 (69%)
Frame = +1
Query: 16 SVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEMLSG 195
SVQNSLL Y++ +E +LFDEM RDV+SWSVMI YVQ+GE EM S
Sbjct: 186 SVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSN 244
Query: 196 NGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDADS 375
+E D +T+VS+LKACA D+ GR+VH VICRG D FVGNS++DMYSKC D +S
Sbjct: 245 ASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHES 304
Query: 376 AFKIFNEMPQKNIVSWNSVLSGL 444
AFK FNEMP +N VSWNS++SGL
Sbjct: 305 AFKAFNEMPCRNTVSWNSIISGL 327
Score = 91.3 bits (225), Expect = 8e-17
Identities = 48/143 (33%), Positives = 82/143 (57%)
Frame = +1
Query: 10 NISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEML 189
N V NSL+ YS+ +E KLFD + +D VSWS MI + G+ +EM
Sbjct: 386 NEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMN 445
Query: 190 SGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDA 369
+P+ +T++S+L+A + D+ + H I RG ++ VG +++DMY+KC +
Sbjct: 446 QAQE-KPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEI 504
Query: 370 DSAFKIFNEMPQKNIVSWNSVLS 438
+ K F+++P+KNIVSW ++++
Sbjct: 505 GLSRKAFDQIPEKNIVSWGAMIA 527
Score = 86.7 bits (213), Expect = 2e-15
Identities = 48/144 (33%), Positives = 82/144 (56%)
Frame = +1
Query: 10 NISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEML 189
++ V NS++ YS+ E K F+EMP R+ VSW+ +I V++ + M
Sbjct: 285 DLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMG 344
Query: 190 SGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDA 369
G DE+T+V++L++C D + +H VI G+ + FV NSL+D YSKC
Sbjct: 345 KA-GFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLI 403
Query: 370 DSAFKIFNEMPQKNIVSWNSVLSG 441
+ A+K+F+ + K+ VSW+++++G
Sbjct: 404 ELAWKLFDRLKTKDTVSWSAMIAG 427
Score = 78.2 bits (191), Expect = 7e-13
Identities = 45/142 (31%), Positives = 77/142 (54%)
Frame = +1
Query: 16 SVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEMLSG 195
S NS+L FY + G L+ +FD M RD VSW++MI ++ G ++
Sbjct: 85 STGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQ-ARV 143
Query: 196 NGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDADS 375
EP+ T+V + AC + ++ G +H Y+I GF V NSL+ MY+ D +
Sbjct: 144 IAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMER 202
Query: 376 AFKIFNEMPQKNIVSWNSVLSG 441
A ++F+EM +++++SW+ ++ G
Sbjct: 203 AEELFDEMCERDVISWSVMIGG 224
Score = 62.4 bits (150), Expect = 4e-08
Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Frame = +1
Query: 1 LLANISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXK 180
L A ++V ++L Y++ G + RK FD++P +++VSW MI A +G
Sbjct: 484 LAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLS 543
Query: 181 EMLSGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVI-CRGFRSDTFVGNSLVDMYSK 357
EM +G++P+ +T +S+L AC+ V+ G + ++ G + +VDM S+
Sbjct: 544 EM-KLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSR 602
Query: 358 CIDADSAFKIFNEMPQK---NIVSWNSVLS 438
+SA + +MP++ W ++LS
Sbjct: 603 AGKLNSAMNLIEKMPERMRDGAGLWGALLS 632
Score = 58.2 bits (139), Expect = 7e-07
Identities = 31/77 (40%), Positives = 47/77 (61%)
Frame = +1
Query: 211 DELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDADSAFKIF 390
D V SILKAC+ + V G+++H ++ +GF S T GNS++D Y K DSA +F
Sbjct: 49 DPTLVHSILKACSSLP-VRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVF 107
Query: 391 NEMPQKNIVSWNSVLSG 441
+ M ++ VSWN ++ G
Sbjct: 108 DSMRSRDSVSWNIMIHG 124
>emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera]
Length = 1007
Score = 157 bits (396), Expect = 1e-36
Identities = 82/143 (57%), Positives = 100/143 (69%)
Frame = +1
Query: 16 SVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEMLSG 195
SVQNSLL Y++ +E +LFDEM RDV+SWSVMI YVQ+GE EM S
Sbjct: 186 SVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAXMALQLFLEMXSN 244
Query: 196 NGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDADS 375
+E D +T+VS+LKACA D+ GR+VH VICRG D FVGNS++DMYSK D +S
Sbjct: 245 AXIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKXDDHES 304
Query: 376 AFKIFNEMPQKNIVSWNSVLSGL 444
AFK FNEMP +N VSWNS++SGL
Sbjct: 305 AFKAFNEMPCRNTVSWNSIISGL 327
Score = 90.9 bits (224), Expect = 1e-16
Identities = 48/143 (33%), Positives = 82/143 (57%)
Frame = +1
Query: 10 NISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEML 189
N V NSL+ YS+ +E KLFD + +D VSWS MI + G+ +EM
Sbjct: 386 NEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMN 445
Query: 190 SGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDA 369
+P+ +T++S+L+A + D+ + H I RG ++ VG +++DMY+KC +
Sbjct: 446 QAQE-KPNGVTILSLLEAFSVSADLKRSKWAHGIXIRRGLAAEVAVGTAILDMYAKCGEI 504
Query: 370 DSAFKIFNEMPQKNIVSWNSVLS 438
+ K F+++P+KNIVSW ++++
Sbjct: 505 GLSRKAFDQIPEKNIVSWGAMIA 527
Score = 87.0 bits (214), Expect = 1e-15
Identities = 48/144 (33%), Positives = 82/144 (56%)
Frame = +1
Query: 10 NISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEML 189
++ V NS++ YS+ E K F+EMP R+ VSW+ +I V++ + M
Sbjct: 285 DLFVGNSIIDMYSKXDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMG 344
Query: 190 SGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDA 369
G DE+T+V++L++C D + +H VI G+ + FV NSL+D YSKC
Sbjct: 345 KA-GFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLI 403
Query: 370 DSAFKIFNEMPQKNIVSWNSVLSG 441
+ A+K+F+ + K+ VSW+++++G
Sbjct: 404 ELAWKLFDRLKTKDTVSWSAMIAG 427
Score = 75.5 bits (184), Expect = 4e-12
Identities = 45/142 (31%), Positives = 76/142 (53%)
Frame = +1
Query: 16 SVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEMLSG 195
S NS FY + G L+ +FD M RD VSW++MI ++ G ++
Sbjct: 85 STGNSXXDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDXGLWWFRQ-ARV 143
Query: 196 NGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDADS 375
EP+ T+V + AC + ++ G +H Y+I GF V NSL+ MY+ D +
Sbjct: 144 IAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMER 202
Query: 376 AFKIFNEMPQKNIVSWNSVLSG 441
A ++F+EM +++++SW+ ++ G
Sbjct: 203 AEELFDEMCERDVISWSVMIGG 224
Score = 58.9 bits (141), Expect = 4e-07
Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Frame = +1
Query: 1 LLANISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXK 180
L A ++V ++L Y++ G + RK FD++P +++VSW MI A +G
Sbjct: 484 LAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLS 543
Query: 181 EMLSGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVI-CRGFRSDTFVGNSLVDMYSK 357
EM +G++P+ +T +S+L AC+ V+ G + ++ G + +VDM +
Sbjct: 544 EM-KLHGLKPNXVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLXR 602
Query: 358 CIDADSAFKIFNEMPQK---NIVSWNSVLS 438
+ A + +MP++ W ++LS
Sbjct: 603 AGKLNXAMNLIEKMPERMRDGAGLWGALLS 632
Score = 56.6 bits (135), Expect = 2e-06
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +1
Query: 211 DELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDADSAFKIF 390
D V SILKAC+ + V G+++H ++ +GF S T GNS D Y K DSA +F
Sbjct: 49 DPTLVHSILKACSSLP-VRHGKSIHASLLKQGFDSLTSTGNSXXDFYMKTGALDSALFVF 107
Query: 391 NEMPQKNIVSWNSVLSG 441
+ M ++ VSWN ++ G
Sbjct: 108 DSMRSRDSVSWNIMIHG 124
>ref|XP_002886104.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297331944|gb|EFH62363.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 723
Score = 152 bits (383), Expect = 4e-35
Identities = 83/143 (58%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Frame = +1
Query: 16 SVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEMLSG 195
SVQNS+L YSEF L RKLFDEM RDV+SWSV+I +YVQS E KEM+
Sbjct: 169 SVQNSILCLYSEFDSLS-ARKLFDEMSERDVISWSVVIRSYVQSQEPVLGLELFKEMVRE 227
Query: 196 NGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGF-RSDTFVGNSLVDMYSKCIDAD 372
EPD +TV S+LKACA + D+D GR+VH + I RGF D FV NSL+DMYSK DAD
Sbjct: 228 AKTEPDCVTVTSVLKACAVLDDIDVGRSVHGFSIRRGFDLVDVFVRNSLIDMYSKGYDAD 287
Query: 373 SAFKIFNEMPQKNIVSWNSVLSG 441
SAF++F+E +NIVSWNS+L+G
Sbjct: 288 SAFRVFDETTCRNIVSWNSILAG 310
Score = 81.6 bits (200), Expect = 6e-14
Identities = 43/147 (29%), Positives = 83/147 (56%)
Frame = +1
Query: 4 LANISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKE 183
L ++ V+NSL+ YS+ + ++FDE R++VSW+ ++ +V + +
Sbjct: 267 LVDVFVRNSLIDMYSKGYDADSAFRVFDETTCRNIVSWNSILAGFVYNQRYDEALEMFR- 325
Query: 184 MLSGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCI 363
++ +E DE+T+VS+L+ C +++H +I RG+ S+ +SL+D Y+ C
Sbjct: 326 LMKKEALEADEVTLVSLLQVCKFFEHPLPCKSIHGVIIRRGYESNEVALSSLMDAYTSCS 385
Query: 364 DADSAFKIFNEMPQKNIVSWNSVLSGL 444
D A +F+ M K++VS ++++SGL
Sbjct: 386 LVDDARTVFDSMSYKDVVSCSTMISGL 412
Score = 74.3 bits (181), Expect = 1e-11
Identities = 48/141 (34%), Positives = 78/141 (55%)
Frame = +1
Query: 13 ISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEMLS 192
+SV NS+ FY + G L + FD M RD VSW+V++ + G + L
Sbjct: 69 VSVGNSIADFYMKCGDLCSGLRAFDCMNSRDSVSWNVIVFGLLDHGFEEEGLWWFSK-LR 127
Query: 193 GNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDAD 372
G EP+ T+V ++ AC + G +H YVI GF + V NS++ +YS+ D+
Sbjct: 128 VWGFEPNVSTLVLVIHACRSLW--FDGEKIHGYVIRSGFWRISSVQNSILCLYSE-FDSL 184
Query: 373 SAFKIFNEMPQKNIVSWNSVL 435
SA K+F+EM +++++SW+ V+
Sbjct: 185 SARKLFDEMSERDVISWSVVI 205
Score = 70.1 bits (170), Expect = 2e-10
Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Frame = +1
Query: 25 NSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEMLSGNGV 204
+SL+ Y+ ++ R +FD M +DVVS S MI + G +M
Sbjct: 375 SSLMDAYTSCSLVDDARTVFDSMSYKDVVSCSTMISGLGRCGRSDEAISIFCQMRD---- 430
Query: 205 EPDELTVVSILKACAGITDVDSGRAVHRYVICRGFR-SDTFVGNSLVDMYSKCIDADSAF 381
+P+ +TV+S+L AC+ + + + H I RG +D V S+VD Y+KC D A
Sbjct: 431 KPNAITVISLLSACSVSAVLRTSKWAHGIAIRRGLAINDISVDTSIVDAYAKCGAIDIAR 490
Query: 382 KIFNEMPQKNIVSWNSVLS 438
+ F+++ +K+IVSW ++S
Sbjct: 491 RTFDQITEKSIVSWTVIIS 509
Score = 62.8 bits (151), Expect = 3e-08
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Frame = +1
Query: 10 NISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEML 189
+ISV S++ Y++ G ++ R+ FD++ + +VSW+V+I AY +G EM
Sbjct: 469 DISVDTSIVDAYAKCGAIDIARRTFDQITEKSIVSWTVIISAYAINGLPDKALASFDEM- 527
Query: 190 SGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDA 369
+ P+ +T ++ L AC V G + R ++ + + +VDM S+ +
Sbjct: 528 KRDSYTPNAVTYLAALSACNHGGLVKKGLMIFRSMVEEDQKPSLQHYSCIVDMLSRAGEI 587
Query: 370 DSAFKIFNEMPQ---KNIVSWNSVLSG 441
D+A ++ +P+ +W ++LSG
Sbjct: 588 DTAMELIKNLPEDVKAGASAWGAILSG 614
>ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539898|gb|EEF41477.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 757
Score = 151 bits (381), Expect = 6e-35
Identities = 79/148 (53%), Positives = 102/148 (68%)
Frame = +1
Query: 1 LLANISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXK 180
L A+ SVQNS L Y++ ++ R LFDEMP +DV+SWS MI YVQ E +
Sbjct: 196 LWASWSVQNSFLCMYADVD-MDCARILFDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQ 254
Query: 181 EMLSGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKC 360
+MLS + + PD + +VS+LKACA ++ GR VH ICRG SD FV NSL+DMYSKC
Sbjct: 255 KMLSTSRITPDGVILVSVLKACANSVNITMGRLVHGLTICRGLDSDLFVKNSLIDMYSKC 314
Query: 361 IDADSAFKIFNEMPQKNIVSWNSVLSGL 444
DA SAF++F+EMP++N VSWNS+LSGL
Sbjct: 315 KDAGSAFEVFSEMPRRNNVSWNSLLSGL 342
Score = 93.6 bits (231), Expect = 2e-17
Identities = 47/144 (32%), Positives = 85/144 (59%)
Frame = +1
Query: 7 ANISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEM 186
+N V NSL+ Y++ +E ++F RDVV WS MI + G+ ++M
Sbjct: 400 SNEIVLNSLIDAYAKCNLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKM 459
Query: 187 LSGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCID 366
G V P+ +T++++L+AC+ ++ H I RG ++ VG ++VDMYSKC +
Sbjct: 460 NEGIEV-PNAVTIINLLQACSVSAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSKCGE 518
Query: 367 ADSAFKIFNEMPQKNIVSWNSVLS 438
+++ K FN++PQKNI++W+++++
Sbjct: 519 IEASRKAFNQIPQKNIITWSTMIA 542
Score = 80.9 bits (198), Expect = 1e-13
Identities = 47/142 (33%), Positives = 77/142 (54%)
Frame = +1
Query: 16 SVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEMLSG 195
S+ NS+L FY + G L+ +FD M RD VSW+V+I + G
Sbjct: 100 SIGNSILNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLDYGALVEGLWQFINARVA 159
Query: 196 NGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDADS 375
G EP+ T+V +++AC + G +H Y+I G + V NS + MY+ +D D
Sbjct: 160 -GFEPNISTLVLLVQACRSLRAKQEGLQLHGYLIQSGLWASWSVQNSFLCMYAD-VDMDC 217
Query: 376 AFKIFNEMPQKNIVSWNSVLSG 441
A +F+EMP+K+++SW++++ G
Sbjct: 218 ARILFDEMPEKDVISWSAMIGG 239
Score = 77.4 bits (189), Expect = 1e-12
Identities = 43/145 (29%), Positives = 82/145 (56%)
Frame = +1
Query: 7 ANISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXKEM 186
+++ V+NSL+ YS+ ++F EMP R+ VSW+ ++ + + + M
Sbjct: 299 SDLFVKNSLIDMYSKCKDAGSAFEVFSEMPRRNNVSWNSLLSGLILNKKYSEALLLVYSM 358
Query: 187 LSGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCID 366
+ G+E DE+T+V+ L+ C +AVH I RG S+ V NSL+D Y+KC
Sbjct: 359 RT-EGIEADEVTLVNCLQICKYFAHPYHCKAVHCATIRRGCESNEIVLNSLIDAYAKCNL 417
Query: 367 ADSAFKIFNEMPQKNIVSWNSVLSG 441
+ A+++F+ ++++V W+++++G
Sbjct: 418 IELAWEVFSRTRRRDVVLWSTMIAG 442
Score = 66.6 bits (161), Expect = 2e-09
Identities = 43/150 (28%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Frame = +1
Query: 1 LLANISVQNSLLGFYSEFGGLEFPRKLFDEMPVRDVVSWSVMIVAYVQSGEXXXXXXXXK 180
L A ++V +++ YS+ G +E RK F+++P +++++WS MI AY +G
Sbjct: 499 LAAEVAVGTAIVDMYSKCGEIEASRKAFNQIPQKNIITWSTMIAAYGMNGLAHEALALLA 558
Query: 181 EMLSGNGVEPDELTVVSILKACAGITDVDSGRAVHRYVI-CRGFRSDTFVGNSLVDMYSK 357
+M S + ++P+ LT +S+L AC+ V+ G +V + +I G + + +VDM S+
Sbjct: 559 QMKS-HEIKPNALTYLSVLTACSHGGLVEMGLSVFKSMIQDHGVDPEFEHYSCMVDMLSR 617
Query: 358 CIDADSAFKIFNEMPQ---KNIVSWNSVLS 438
D A ++ MP+ W ++LS
Sbjct: 618 AGKLDDAMELIRMMPETFRAGASVWGALLS 647
Score = 57.4 bits (137), Expect = 1e-06
Identities = 26/70 (37%), Positives = 46/70 (65%)
Frame = +1
Query: 232 ILKACAGITDVDSGRAVHRYVICRGFRSDTFVGNSLVDMYSKCIDADSAFKIFNEMPQKN 411
+LKAC+ ++ +D G+ +H +I F S T +GNS+++ Y KC + D+A +F+ M ++
Sbjct: 71 VLKACSYLSYID-GKCLHACLIKTAFDSFTSIGNSILNFYIKCGELDTAVSVFDSMRSRD 129
Query: 412 IVSWNSVLSG 441
VSWN ++ G
Sbjct: 130 SVSWNVLIHG 139