BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038281
         (247 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523226.1| pentatricopeptide repeat-containing protein,...    69   4e-10
ref|XP_002868306.1| pentatricopeptide repeat-containing protein ...    63   3e-08
emb|CBI24313.3| unnamed protein product [Vitis vinifera]               61   1e-07
ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containi...    61   1e-07
ref|NP_193153.3| pentatricopeptide repeat-containing protein [Ar...    60   2e-07

>ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537522|gb|EEF39147.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 488

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 29/47 (61%), Positives = 35/47 (74%)
 Frame = +3

Query: 105 HGKSVHGWCVRRSLVSELSLGNALINMYVKCSAMVSAHCMFSVMPDR 245
           HGKSVHGWCVR  L  ELSLGNA+++MY+KC  +  AH  F  MP+R
Sbjct: 258 HGKSVHGWCVRNCLRLELSLGNAIVHMYIKCGMLAYAHRFFDKMPER 304


>ref|XP_002868306.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297314142|gb|EFH44565.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 458

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 28/47 (59%), Positives = 34/47 (72%)
 Frame = +3

Query: 105 HGKSVHGWCVRRSLVSELSLGNALINMYVKCSAMVSAHCMFSVMPDR 245
           HGKSVHGWC+RR     L+LGNA+ +MYVKCS +  AH +F  MP R
Sbjct: 234 HGKSVHGWCIRRCSCFGLNLGNAITDMYVKCSILDYAHTVFVNMPRR 280


>emb|CBI24313.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
 Frame = +3

Query: 99  GW--HGKSVHGWCVRRSLVSELSLGNALINMYVKCSAMVSAHCMFSVMPDR 245
           GW  HGKSVHGW  RR L   L+LGNAL+  YVKC+A+  ++ +F  MP+R
Sbjct: 177 GWLKHGKSVHGWITRRCLALGLNLGNALVYFYVKCAALGYSYNLFDKMPER 227


>ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14170-like [Vitis vinifera]
          Length = 455

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
 Frame = +3

Query: 99  GW--HGKSVHGWCVRRSLVSELSLGNALINMYVKCSAMVSAHCMFSVMPDR 245
           GW  HGKSVHGW  RR L   L+LGNAL+  YVKC+A+  ++ +F  MP+R
Sbjct: 225 GWLKHGKSVHGWITRRCLALGLNLGNALVYFYVKCAALGYSYNLFDKMPER 275


>ref|NP_193153.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635637|sp|Q5XEY7.2|PP309_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g14170 gi|332657989|gb|AEE83389.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +3

Query: 105 HGKSVHGWCVRRSLVSELSLGNALINMYVKCSAMVSAHCMFSVMPDR 245
           HGKSVHGWC+RR     L+LGNA+ +MYVKCS +  AH +F  M  R
Sbjct: 253 HGKSVHGWCIRRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMSRR 299