BLASTX nr result
ID: Coptis21_contig00038261
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00038261
(268 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containi... 145 4e-33
gb|AEK83168.1| At1g74600-like protein [Capsella grandiflora] 133 2e-29
gb|AEK83161.1| At1g74600-like protein [Capsella grandiflora] 132 2e-29
gb|AEK83151.1| At1g74600-like protein [Capsella grandiflora] gi|... 132 2e-29
gb|ACN57373.1| At1g74600-like protein [Capsella rubella] gi|2245... 132 2e-29
>ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product
[Vitis vinifera]
Length = 893
Score = 145 bits (365), Expect = 4e-33
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +1
Query: 1 AQHGKGMEALRLFDLMRKKGVEPDSVTFVGVLSACSHSGLVEEGYSHLNSMTKYHGIKPG 180
AQHGKG EAL+++DLMRK+G +PDSVTFVGVLSACSH+G+VEEGYSHLNSM K +GI+PG
Sbjct: 727 AQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPG 786
Query: 181 SRHYACMVEILGRSGRLEEAASFIANMP 264
HYACMV++LGRSGRL+EA FI NMP
Sbjct: 787 YYHYACMVDLLGRSGRLKEAERFINNMP 814
>gb|AEK83168.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 133 bits (334), Expect = 2e-29
Identities = 62/88 (70%), Positives = 74/88 (84%)
Frame = +1
Query: 1 AQHGKGMEALRLFDLMRKKGVEPDSVTFVGVLSACSHSGLVEEGYSHLNSMTKYHGIKPG 180
AQHGK EAL++++LM++KGV+PD VTFVGVLSACSH GLVEEGY HL SM K +GI+P
Sbjct: 50 AQHGKATEALQMYNLMKEKGVKPDKVTFVGVLSACSHGGLVEEGYXHLKSMVKDYGIEPE 109
Query: 181 SRHYACMVEILGRSGRLEEAASFIANMP 264
+RHY CMV+ LGRSGRL EA SFI +MP
Sbjct: 110 NRHYVCMVDTLGRSGRLREAESFINSMP 137
>gb|AEK83161.1| At1g74600-like protein [Capsella grandiflora]
Length = 204
Score = 132 bits (333), Expect = 2e-29
Identities = 62/88 (70%), Positives = 74/88 (84%)
Frame = +1
Query: 1 AQHGKGMEALRLFDLMRKKGVEPDSVTFVGVLSACSHSGLVEEGYSHLNSMTKYHGIKPG 180
AQHGK EAL++++LM++KGV+PD VTFVGVLSACSH GLVEEGY HL SM K +GI+P
Sbjct: 50 AQHGKATEALQMYNLMKEKGVKPDKVTFVGVLSACSHGGLVEEGYLHLKSMVKDYGIEPE 109
Query: 181 SRHYACMVEILGRSGRLEEAASFIANMP 264
+RHY CMV+ LGRSGRL EA SFI +MP
Sbjct: 110 NRHYVCMVDTLGRSGRLREAESFINSMP 137
>gb|AEK83151.1| At1g74600-like protein [Capsella grandiflora]
gi|341606099|gb|AEK83152.1| At1g74600-like protein
[Capsella grandiflora] gi|341606101|gb|AEK83153.1|
At1g74600-like protein [Capsella grandiflora]
gi|341606103|gb|AEK83154.1| At1g74600-like protein
[Capsella grandiflora] gi|341606105|gb|AEK83155.1|
At1g74600-like protein [Capsella grandiflora]
gi|341606107|gb|AEK83156.1| At1g74600-like protein
[Capsella grandiflora] gi|341606109|gb|AEK83157.1|
At1g74600-like protein [Capsella grandiflora]
gi|341606111|gb|AEK83158.1| At1g74600-like protein
[Capsella grandiflora] gi|341606113|gb|AEK83159.1|
At1g74600-like protein [Capsella grandiflora]
gi|341606115|gb|AEK83160.1| At1g74600-like protein
[Capsella grandiflora] gi|341606119|gb|AEK83162.1|
At1g74600-like protein [Capsella grandiflora]
gi|341606121|gb|AEK83163.1| At1g74600-like protein
[Capsella grandiflora] gi|341607201|gb|AEK83703.1|
At1g74600-like protein [Capsella rubella]
gi|341607203|gb|AEK83704.1| At1g74600-like protein
[Capsella rubella] gi|341607205|gb|AEK83705.1|
At1g74600-like protein [Capsella rubella]
gi|341607207|gb|AEK83706.1| At1g74600-like protein
[Capsella rubella] gi|341607209|gb|AEK83707.1|
At1g74600-like protein [Capsella rubella]
gi|341607211|gb|AEK83708.1| At1g74600-like protein
[Capsella rubella] gi|341607213|gb|AEK83709.1|
At1g74600-like protein [Capsella rubella]
gi|341607215|gb|AEK83710.1| At1g74600-like protein
[Capsella rubella] gi|341607217|gb|AEK83711.1|
At1g74600-like protein [Capsella rubella]
gi|341607219|gb|AEK83712.1| At1g74600-like protein
[Capsella rubella] gi|341607221|gb|AEK83713.1|
At1g74600-like protein [Capsella rubella]
gi|341607223|gb|AEK83714.1| At1g74600-like protein
[Capsella rubella] gi|341607225|gb|AEK83715.1|
At1g74600-like protein [Capsella rubella]
gi|341607227|gb|AEK83716.1| At1g74600-like protein
[Capsella rubella] gi|399107036|gb|AFP20306.1|
At1g74600-like protein, partial [Capsella grandiflora]
gi|399107038|gb|AFP20307.1| At1g74600-like protein,
partial [Capsella grandiflora]
gi|399107040|gb|AFP20308.1| At1g74600-like protein,
partial [Capsella grandiflora]
gi|399107042|gb|AFP20309.1| At1g74600-like protein,
partial [Capsella grandiflora]
Length = 204
Score = 132 bits (333), Expect = 2e-29
Identities = 62/88 (70%), Positives = 74/88 (84%)
Frame = +1
Query: 1 AQHGKGMEALRLFDLMRKKGVEPDSVTFVGVLSACSHSGLVEEGYSHLNSMTKYHGIKPG 180
AQHGK EAL++++LM++KGV+PD VTFVGVLSACSH GLVEEGY HL SM K +GI+P
Sbjct: 50 AQHGKATEALQMYNLMKEKGVKPDKVTFVGVLSACSHGGLVEEGYLHLKSMVKDYGIEPE 109
Query: 181 SRHYACMVEILGRSGRLEEAASFIANMP 264
+RHY CMV+ LGRSGRL EA SFI +MP
Sbjct: 110 NRHYVCMVDTLGRSGRLREAESFINSMP 137
>gb|ACN57373.1| At1g74600-like protein [Capsella rubella]
gi|224577405|gb|ACN57376.1| At1g74600-like protein
[Capsella rubella] gi|224577407|gb|ACN57377.1|
At1g74600-like protein [Capsella rubella]
gi|224577411|gb|ACN57379.1| At1g74600-like protein
[Capsella rubella] gi|224577413|gb|ACN57380.1|
At1g74600-like protein [Capsella rubella]
gi|224577423|gb|ACN57385.1| At1g74600-like protein
[Capsella rubella] gi|224577433|gb|ACN57390.1|
At1g74600-like protein [Capsella grandiflora]
Length = 176
Score = 132 bits (333), Expect = 2e-29
Identities = 62/88 (70%), Positives = 74/88 (84%)
Frame = +1
Query: 1 AQHGKGMEALRLFDLMRKKGVEPDSVTFVGVLSACSHSGLVEEGYSHLNSMTKYHGIKPG 180
AQHGK EAL++++LM++KGV+PD VTFVGVLSACSH GLVEEGY HL SM K +GI+P
Sbjct: 42 AQHGKATEALQMYNLMKEKGVKPDKVTFVGVLSACSHGGLVEEGYLHLKSMVKDYGIEPE 101
Query: 181 SRHYACMVEILGRSGRLEEAASFIANMP 264
+RHY CMV+ LGRSGRL EA SFI +MP
Sbjct: 102 NRHYVCMVDTLGRSGRLREAESFINSMP 129