BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038231
         (281 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513372.1| pentatricopeptide repeat-containing protein,...    40   3e-07
ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containi...    43   3e-06
emb|CBI24193.3| unnamed protein product [Vitis vinifera]               43   4e-06
emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]    43   4e-06

>ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547280|gb|EEF48775.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 597

 Score = 40.4 bits (93), Expect(2) = 3e-07
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
 Frame = -1

Query: 188 QLGFKSQGVVKGS----YAKCANVRSARFVYDMTEEKDLISCTALITGYGREGWEYFCSV 21
           QLGF S   + GS    YAK   ++SA  +Y    +KD+IS TA++TGY R+     CS 
Sbjct: 267 QLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARK-----CSY 321

Query: 20  TNE 12
           + E
Sbjct: 322 SRE 324



 Score = 38.5 bits (88), Expect(2) = 3e-07
 Identities = 16/30 (53%), Positives = 24/30 (80%)
 Frame = -2

Query: 280 PDQFSIGSFLRASSCGNSLMSVLQIHGLVL 191
           PD F++GS L+ASS  N+L+ V QIHG+++
Sbjct: 237 PDCFTLGSVLKASSRANNLIKVCQIHGIII 266


>ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1724

 Score = 42.7 bits (99), Expect(2) = 3e-06
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
 Frame = -1

Query: 188 QLGFKSQGVVKG----SYAKCANVRSARFVYDMTEEKDLISCTALITGYGREG 42
           QLG+ S  +V G    +YAK  ++RSA+ +     +KDL S TALITGY  EG
Sbjct: 260 QLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEG 312



 Score = 32.7 bits (73), Expect(2) = 3e-06
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -2

Query: 280 PDQFSIGSFLRASSCGNSLMSVLQIHGLV 194
           PD +++GS LRAS+ G  L+   QIHG++
Sbjct: 230 PDCYTLGSVLRASAEGGGLIIANQIHGII 258


>emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score = 42.7 bits (99), Expect(2) = 4e-06
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
 Frame = -1

Query: 188 QLGFKSQGVVKG----SYAKCANVRSARFVYDMTEEKDLISCTALITGYGREG 42
           QLG+ S  +V G    +YAK  ++RSA+ +     +KDL S TALITGY  EG
Sbjct: 221 QLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEG 273



 Score = 32.7 bits (73), Expect(2) = 4e-06
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -2

Query: 280 PDQFSIGSFLRASSCGNSLMSVLQIHGLV 194
           PD +++GS LRAS+ G  L+   QIHG++
Sbjct: 191 PDCYTLGSVLRASAEGGGLIIANQIHGII 219


>emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
          Length = 711

 Score = 42.7 bits (99), Expect(2) = 4e-06
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
 Frame = -1

Query: 188 QLGFKSQGVVKG----SYAKCANVRSARFVYDMTEEKDLISCTALITGYGREG 42
           QLG+ S  +V G    +YAK  ++RSA+ +     +KDL S TALITGY  EG
Sbjct: 381 QLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEG 433



 Score = 32.7 bits (73), Expect(2) = 4e-06
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -2

Query: 280 PDQFSIGSFLRASSCGNSLMSVLQIHGLV 194
           PD +++GS LRAS+ G  L+   QIHG++
Sbjct: 351 PDCYTLGSVLRASAEGGGLIIANQIHGII 379