BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038180
         (242 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat...    60   2e-07
ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containi...    58   9e-07
ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containi...    58   9e-07
ref|XP_002512645.1| pentatricopeptide repeat-containing protein,...    58   9e-07
emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]    58   9e-07

>ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
 Frame = +2

Query: 8   DGLELFYKMKCVEFVVPDEFSFATVLTGCASVSELKLGMQIHAGVVVVGFERECAL--AV 181
           + LELF +M+    VVP+ F+FA+VL  CAS+  L LG QIH+ V+ VG +    +  A+
Sbjct: 289 EALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNAL 348

Query: 182 CNMYLRCGEVSFAERFF 232
            ++Y +CGE+  + + F
Sbjct: 349 MDVYAKCGEIENSVKLF 365


>ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
 Frame = +2

Query: 8   DGLELFYKMKCVEFVVPDEFSFATVLTGCASVSELKLGMQIHAGVVVVGFERECAL--AV 181
           D L  F KM+ + F  P EFSFATV++ CA +S L  G Q HA +V  GF  +  +  ++
Sbjct: 500 DALSFFKKMRQLGFF-PSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSL 558

Query: 182 CNMYLRCGEVSFAERFF 232
             MY +CG+V+ A  FF
Sbjct: 559 IEMYCKCGDVNGARCFF 575


>ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = +2

Query: 8   DGLELFYKMKCVEFVVPDEFSFATVLTGCASVSELKLGMQIHAGVVVVGFERECAL--AV 181
           + L  FY M+    + PD F+F TVLT C ++  LK G ++HA V+  GF     +  ++
Sbjct: 245 EALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSL 304

Query: 182 CNMYLRCGEVSFAERFF 232
            +MY +CG V  ++R F
Sbjct: 305 VDMYGKCGSVGESQRIF 321


>ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548606|gb|EEF50097.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 716

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = +2

Query: 8   DGLELFYKMKCVEFVVPDEFSFATVLTGCASVSELKLGMQIHAGVVVVGFERECAL--AV 181
           + +ELF +M+   FV+P++F+FA+VL  CAS+  L+LG Q+H  V+ VG +    +  A+
Sbjct: 226 EAVELFGQMRRA-FVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNAL 284

Query: 182 CNMYLRCGEVSFAERFFWE 238
            ++Y +CG +  + + F E
Sbjct: 285 MDVYAKCGRLDNSMKLFME 303


>emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = +2

Query: 8   DGLELFYKMKCVEFVVPDEFSFATVLTGCASVSELKLGMQIHAGVVVVGFERECAL--AV 181
           + L  FY M+    + PD F+F TVLT C ++  LK G ++HA V+  GF     +  ++
Sbjct: 304 EALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSL 363

Query: 182 CNMYLRCGEVSFAERFF 232
            +MY +CG V  ++R F
Sbjct: 364 VDMYGKCGSVGESQRIF 380