BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038169
         (289 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN62791.1| hypothetical protein VITISV_024905 [Vitis vinifera]    89   5e-16
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]          82   4e-14
gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Ze...    82   4e-14
emb|CAN65521.1| hypothetical protein VITISV_025368 [Vitis vinifera]    82   5e-14
emb|CAN68752.1| hypothetical protein VITISV_003582 [Vitis vinifera]    82   6e-14

>emb|CAN62791.1| hypothetical protein VITISV_024905 [Vitis vinifera]
          Length = 956

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 42/77 (54%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
 Frame = +2

Query: 62  TRVQQHHSVGDVLGDLKADLQTRSKIK-NTVHYVCYASLIEPKNVTEALNDEDWILAMQE 238
           +RV ++H + +V+G+ +  + TR + K N V YVCY S IEPKNV EALNDE W+ A+ E
Sbjct: 453 SRVPKNHPLSNVIGNYEDSMVTRRQSKLNEVSYVCYTSQIEPKNVEEALNDEAWVDALHE 512

Query: 239 ELGQFVRSNVWYLVPRP 289
           EL QF R++VW+LVPRP
Sbjct: 513 ELNQFSRNDVWFLVPRP 529


>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
          Length = 1760

 Score = 82.4 bits (202), Expect = 4e-14
 Identities = 36/74 (48%), Positives = 49/74 (66%)
 Frame = +2

Query: 68   VQQHHSVGDVLGDLKADLQTRSKIKNTVHYVCYASLIEPKNVTEALNDEDWILAMQEELG 247
            +QQ H V  +LGD+   + TRS++ +   +  + S IEP  V EAL D DW++AMQEEL 
Sbjct: 1213 IQQDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELN 1272

Query: 248  QFVRSNVWYLVPRP 289
             F R+ VW+LVPRP
Sbjct: 1273 NFTRNEVWHLVPRP 1286


>gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Zea mays]
          Length = 1604

 Score = 82.4 bits (202), Expect = 4e-14
 Identities = 36/74 (48%), Positives = 49/74 (66%)
 Frame = +2

Query: 68   VQQHHSVGDVLGDLKADLQTRSKIKNTVHYVCYASLIEPKNVTEALNDEDWILAMQEELG 247
            +QQ H V  +LGD+   + TRS++ +   +  + S IEP  V EAL D DW++AMQEEL 
Sbjct: 1213 IQQDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELN 1272

Query: 248  QFVRSNVWYLVPRP 289
             F R+ VW+LVPRP
Sbjct: 1273 NFTRNEVWHLVPRP 1286


>emb|CAN65521.1| hypothetical protein VITISV_025368 [Vitis vinifera]
          Length = 1291

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 40/75 (53%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +2

Query: 68  VQQHHSVGDVLGDLKADLQTRSKIK-NTVHYVCYASLIEPKNVTEALNDEDWILAMQEEL 244
           V ++H + +V+G+ +  + TR + K N V+YV Y S IEPKNV EALNDE W+ A+ EEL
Sbjct: 772 VPKNHPLSNVIGNYEDIMVTRRQSKLNEVNYVFYTSQIEPKNVEEALNDEAWVEALHEEL 831

Query: 245 GQFVRSNVWYLVPRP 289
            QF R++VW+LVPRP
Sbjct: 832 NQFSRNDVWFLVPRP 846


>emb|CAN68752.1| hypothetical protein VITISV_003582 [Vitis vinifera]
          Length = 249

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 36/77 (46%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
 Frame = +2

Query: 62  TRVQQHHSVGDVLGDLKADLQTRSKIK-NTVHYVCYASLIEPKNVTEALNDEDWILAMQE 238
           +++ ++H + +V+G+ K ++ T+ + K N + YVCY S IEPK V EALN+E W+ A+ E
Sbjct: 118 SKIPKNHPLSNVIGNYKDNMVTKRQSKLNEISYVCYTSQIEPKKVEEALNNEAWVEALHE 177

Query: 239 ELGQFVRSNVWYLVPRP 289
           EL QF R+  W+LVPRP
Sbjct: 178 ELNQFSRNEAWFLVPRP 194