BLASTX nr result
ID: Coptis21_contig00038169
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00038169 (289 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAN62791.1| hypothetical protein VITISV_024905 [Vitis vinifera] 89 5e-16 gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 82 4e-14 gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Ze... 82 4e-14 emb|CAN65521.1| hypothetical protein VITISV_025368 [Vitis vinifera] 82 5e-14 emb|CAN68752.1| hypothetical protein VITISV_003582 [Vitis vinifera] 82 6e-14 >emb|CAN62791.1| hypothetical protein VITISV_024905 [Vitis vinifera] Length = 956 Score = 88.6 bits (218), Expect = 5e-16 Identities = 42/77 (54%), Positives = 57/77 (74%), Gaps = 1/77 (1%) Frame = +2 Query: 62 TRVQQHHSVGDVLGDLKADLQTRSKIK-NTVHYVCYASLIEPKNVTEALNDEDWILAMQE 238 +RV ++H + +V+G+ + + TR + K N V YVCY S IEPKNV EALNDE W+ A+ E Sbjct: 453 SRVPKNHPLSNVIGNYEDSMVTRRQSKLNEVSYVCYTSQIEPKNVEEALNDEAWVDALHE 512 Query: 239 ELGQFVRSNVWYLVPRP 289 EL QF R++VW+LVPRP Sbjct: 513 ELNQFSRNDVWFLVPRP 529 >gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] Length = 1760 Score = 82.4 bits (202), Expect = 4e-14 Identities = 36/74 (48%), Positives = 49/74 (66%) Frame = +2 Query: 68 VQQHHSVGDVLGDLKADLQTRSKIKNTVHYVCYASLIEPKNVTEALNDEDWILAMQEELG 247 +QQ H V +LGD+ + TRS++ + + + S IEP V EAL D DW++AMQEEL Sbjct: 1213 IQQDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELN 1272 Query: 248 QFVRSNVWYLVPRP 289 F R+ VW+LVPRP Sbjct: 1273 NFTRNEVWHLVPRP 1286 >gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Zea mays] Length = 1604 Score = 82.4 bits (202), Expect = 4e-14 Identities = 36/74 (48%), Positives = 49/74 (66%) Frame = +2 Query: 68 VQQHHSVGDVLGDLKADLQTRSKIKNTVHYVCYASLIEPKNVTEALNDEDWILAMQEELG 247 +QQ H V +LGD+ + TRS++ + + + S IEP V EAL D DW++AMQEEL Sbjct: 1213 IQQDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELN 1272 Query: 248 QFVRSNVWYLVPRP 289 F R+ VW+LVPRP Sbjct: 1273 NFTRNEVWHLVPRP 1286 >emb|CAN65521.1| hypothetical protein VITISV_025368 [Vitis vinifera] Length = 1291 Score = 82.0 bits (201), Expect = 5e-14 Identities = 40/75 (53%), Positives = 55/75 (73%), Gaps = 1/75 (1%) Frame = +2 Query: 68 VQQHHSVGDVLGDLKADLQTRSKIK-NTVHYVCYASLIEPKNVTEALNDEDWILAMQEEL 244 V ++H + +V+G+ + + TR + K N V+YV Y S IEPKNV EALNDE W+ A+ EEL Sbjct: 772 VPKNHPLSNVIGNYEDIMVTRRQSKLNEVNYVFYTSQIEPKNVEEALNDEAWVEALHEEL 831 Query: 245 GQFVRSNVWYLVPRP 289 QF R++VW+LVPRP Sbjct: 832 NQFSRNDVWFLVPRP 846 >emb|CAN68752.1| hypothetical protein VITISV_003582 [Vitis vinifera] Length = 249 Score = 81.6 bits (200), Expect = 6e-14 Identities = 36/77 (46%), Positives = 55/77 (71%), Gaps = 1/77 (1%) Frame = +2 Query: 62 TRVQQHHSVGDVLGDLKADLQTRSKIK-NTVHYVCYASLIEPKNVTEALNDEDWILAMQE 238 +++ ++H + +V+G+ K ++ T+ + K N + YVCY S IEPK V EALN+E W+ A+ E Sbjct: 118 SKIPKNHPLSNVIGNYKDNMVTKRQSKLNEISYVCYTSQIEPKKVEEALNNEAWVEALHE 177 Query: 239 ELGQFVRSNVWYLVPRP 289 EL QF R+ W+LVPRP Sbjct: 178 ELNQFSRNEAWFLVPRP 194