BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038143
         (565 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528778.1| pentatricopeptide repeat-containing protein,...   259   3e-67
emb|CBI33923.3| unnamed protein product [Vitis vinifera]              253   1e-65
ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containi...   253   1e-65
ref|XP_002329535.1| predicted protein [Populus trichocarpa] gi|2...   245   3e-63
ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containi...   240   1e-61

>ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531781|gb|EEF33600.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 518

 Score =  259 bits (661), Expect = 3e-67
 Identities = 125/187 (66%), Positives = 154/187 (82%)
 Frame = +2

Query: 5   KAHGRIVKRGFEVDLFVRNALIYMYSKIGRVWDARKVFDMRCELDLVSWNSMIDGYVKNG 184
           KAH  +VK GFE D +VRN+L++MYS  GRV DAR +F+    LDLVSWNSMI GYVKNG
Sbjct: 177 KAHACVVKFGFEFDAYVRNSLLHMYSACGRVLDARLLFESGFVLDLVSWNSMIIGYVKNG 236

Query: 185 EVGVARECFDVMPERDVWSWNSMIAGYVGLGDMEAARGLFEGMVARDVVSWNSMVDGYAR 364
           ++G+ARE FD MPERD +SWNSMI+GYVG GD+EAA+ LF+ M +RDVVSWN M+DGYA+
Sbjct: 237 DIGLARELFDEMPERDAFSWNSMISGYVGAGDVEAAKKLFDNMPSRDVVSWNCMIDGYAK 296

Query: 365 IGNVSVARELFDLMRSRNVVSWNTMLALYARSKDNAECLRLFDRMMQEGEVKPNEATLMS 544
           I NVSVAR LF+ M  RN+VSWN MLALY + K+  ECL+LFDRM++E E++PN+A+LMS
Sbjct: 297 IRNVSVARWLFNQMPFRNIVSWNIMLALYLKCKNYGECLKLFDRMIEERELRPNKASLMS 356

Query: 545 VLTACAN 565
           VLTACAN
Sbjct: 357 VLTACAN 363



 Score = 98.2 bits (243), Expect = 8e-19
 Identities = 69/216 (31%), Positives = 102/216 (47%), Gaps = 40/216 (18%)
 Frame = +2

Query: 38  EVDLFVRNALIYMYSKIGRVWDARKVFDMRCELDLVSWNSMIDGYVKNGEVGVARECFDV 217
           E D F  N++I  Y   G V  A+K+FD     D+VSWN MIDGY K   V VAR  F+ 
Sbjct: 250 ERDAFSWNSMISGYVGAGDVEAAKKLFDNMPSRDVVSWNCMIDGYAKIRNVSVARWLFNQ 309

Query: 218 MPERDVWSWNSMIAGYVGLGDMEAARGLFEGMVAR-----------------------DV 328
           MP R++ SWN M+A Y+   +      LF+ M+                         D+
Sbjct: 310 MPFRNIVSWNIMLALYLKCKNYGECLKLFDRMIEERELRPNKASLMSVLTACANFRRLDL 369

Query: 329 VSW-----------------NSMVDGYARIGNVSVARELFDLMRSRNVVSWNTMLALYAR 457
             W                  +++  YA+ G +  AR +F  M  ++VVSWN+M+  YA 
Sbjct: 370 GKWIHSYIKDNEVESDELLSTALLTMYAKCGMMDFARHIFTKMPHKSVVSWNSMIMGYAI 429

Query: 458 SKDNAECLRLFDRMMQEGEVKPNEATLMSVLTACAN 565
           +    + L  F  M ++  + PN AT +SVL+AC++
Sbjct: 430 NGHAEKALETFLEM-EKSSMMPNAATFVSVLSACSH 464


>emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  253 bits (647), Expect = 1e-65
 Identities = 125/188 (66%), Positives = 150/188 (79%)
 Frame = +2

Query: 2   DKAHGRIVKRGFEVDLFVRNALIYMYSKIGRVWDARKVFDMRCELDLVSWNSMIDGYVKN 181
           +K H RI+K GFE+DLFVRN+LI+MYS  GR+ DAR +F++    DLV+WNSMIDGYVKN
Sbjct: 30  EKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKN 89

Query: 182 GEVGVARECFDVMPERDVWSWNSMIAGYVGLGDMEAARGLFEGMVARDVVSWNSMVDGYA 361
           GE+G ARE F+ MPERD++SWNSMIAGYVG GDM AA  LF  M  RD+VSWN M+DGYA
Sbjct: 90  GEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYA 149

Query: 362 RIGNVSVARELFDLMRSRNVVSWNTMLALYARSKDNAECLRLFDRMMQEGEVKPNEATLM 541
           ++ N+ +A ELF+ M  RNVVSWN MLALY R KD  ECLR+FD+MM  GE  PNEATL+
Sbjct: 150 QVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMM--GETMPNEATLV 207

Query: 542 SVLTACAN 565
           SVLTACA+
Sbjct: 208 SVLTACAH 215


>ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  253 bits (647), Expect = 1e-65
 Identities = 125/188 (66%), Positives = 150/188 (79%)
 Frame = +2

Query: 2   DKAHGRIVKRGFEVDLFVRNALIYMYSKIGRVWDARKVFDMRCELDLVSWNSMIDGYVKN 181
           +K H RI+K GFE+DLFVRN+LI+MYS  GR+ DAR +F++    DLV+WNSMIDGYVKN
Sbjct: 179 EKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKN 238

Query: 182 GEVGVARECFDVMPERDVWSWNSMIAGYVGLGDMEAARGLFEGMVARDVVSWNSMVDGYA 361
           GE+G ARE F+ MPERD++SWNSMIAGYVG GDM AA  LF  M  RD+VSWN M+DGYA
Sbjct: 239 GEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYA 298

Query: 362 RIGNVSVARELFDLMRSRNVVSWNTMLALYARSKDNAECLRLFDRMMQEGEVKPNEATLM 541
           ++ N+ +A ELF+ M  RNVVSWN MLALY R KD  ECLR+FD+MM  GE  PNEATL+
Sbjct: 299 QVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMM--GETMPNEATLV 356

Query: 542 SVLTACAN 565
           SVLTACA+
Sbjct: 357 SVLTACAH 364


>ref|XP_002329535.1| predicted protein [Populus trichocarpa] gi|222870244|gb|EEF07375.1|
           predicted protein [Populus trichocarpa]
          Length = 617

 Score =  245 bits (626), Expect = 3e-63
 Identities = 124/186 (66%), Positives = 147/186 (79%)
 Frame = +2

Query: 5   KAHGRIVKRGFEVDLFVRNALIYMYSKIGRVWDARKVFDMRCELDLVSWNSMIDGYVKNG 184
           K H  +VK GFE+DLFVRN+ I  YS  GR  DAR VFD    LDLVSWNSMIDGYVKNG
Sbjct: 179 KVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNG 238

Query: 185 EVGVARECFDVMPERDVWSWNSMIAGYVGLGDMEAARGLFEGMVARDVVSWNSMVDGYAR 364
           E+G+ARE FD M ERD+++WNSMI+GYVG+GDMEAARGLF+ M +RDVVSWN M+DG+AR
Sbjct: 239 ELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFAR 298

Query: 365 IGNVSVARELFDLMRSRNVVSWNTMLALYARSKDNAECLRLFDRMMQEGEVKPNEATLMS 544
           I +VS+A + FD M  RNVVSWN MLALY R K  ++CLR FD MM  G+  P+EA+L+S
Sbjct: 299 IKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFD-MMVGGDFVPDEASLVS 357

Query: 545 VLTACA 562
           VLTACA
Sbjct: 358 VLTACA 363


>ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  240 bits (612), Expect = 1e-61
 Identities = 121/189 (64%), Positives = 147/189 (77%), Gaps = 2/189 (1%)
 Frame = +2

Query: 5   KAHGRIVKRGFEVDLFVRNALIYMYSKIGRVWDARKVFDMRCELDLVSWNSMIDGYVKNG 184
           K H RIVK GF  DLF RN+LI MYS  GR+ +AR VFD  C LDLVS+NSMIDGYVKNG
Sbjct: 128 KGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNG 187

Query: 185 EVGVARECFDVMPERDVWSWNSMIAGYVGLGDMEAARGLFEGMVARDVVSWNSMVDGYAR 364
           E+G AR+ F+ MP+RDV SWN +IAGYVG+GD++AA  LFE +  RD VSWN M+DG AR
Sbjct: 188 EIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCAR 247

Query: 365 IGNVSVARELFDLMRS--RNVVSWNTMLALYARSKDNAECLRLFDRMMQEGEVKPNEATL 538
           +GNVS+A + FD M +  RNVVSWN++LAL+AR K+  ECL LF +M++  E  PNEATL
Sbjct: 248 VGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATL 307

Query: 539 MSVLTACAN 565
           +SVLTACAN
Sbjct: 308 VSVLTACAN 316