BLASTX nr result

ID: Coptis21_contig00038107 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038107
         (257 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002313448.1| predicted protein [Populus trichocarpa] gi|2...    71   1e-10
ref|NP_187556.1| uncharacterized protein [Arabidopsis thaliana] ...    70   1e-10
ref|XP_002882620.1| hypothetical protein ARALYDRAFT_341087 [Arab...    70   1e-10
emb|CAN80549.1| hypothetical protein VITISV_019389 [Vitis vinifera]    69   4e-10
ref|XP_002281216.1| PREDICTED: uncharacterized protein LOC100243...    69   5e-10

>ref|XP_002313448.1| predicted protein [Populus trichocarpa] gi|222849856|gb|EEE87403.1|
           predicted protein [Populus trichocarpa]
          Length = 807

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 33/67 (49%), Positives = 47/67 (70%)
 Frame = -3

Query: 204 TNLEESVITQKQEACIRSKFLKYWCVRVSNEKLMSALKCSVSLGLAVLFGMIFSKENGHW 25
           T  + S    KQ    +S ++  W   VS+++LM A KCS+SLGLAVLFG+I+SK++G+W
Sbjct: 367 TQQKGSSTPSKQTGFFKSTWMSNWSTSVSSKRLMPAFKCSLSLGLAVLFGLIYSKKDGYW 426

Query: 24  SGLTVAV 4
           SGL VA+
Sbjct: 427 SGLPVAI 433


>ref|NP_187556.1| uncharacterized protein [Arabidopsis thaliana]
           gi|6478934|gb|AAF14039.1|AC011436_23 hypothetical
           protein [Arabidopsis thaliana]
           gi|6682225|gb|AAF23277.1|AC016661_2 hypothetical protein
           [Arabidopsis thaliana] gi|332641248|gb|AEE74769.1|
           uncharacterized protein [Arabidopsis thaliana]
          Length = 775

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 36/83 (43%), Positives = 51/83 (61%)
 Frame = -3

Query: 252 LRKDQPIRNGATNKQVTNLEESVITQKQEACIRSKFLKYWCVRVSNEKLMSALKCSVSLG 73
           LR+D    NG T       EE +    +   +  KF    CV ++ E+ + A KCS+SLG
Sbjct: 346 LRQDSKSVNGRTT------EEEIHPANEGLSMARKFWDILCVWMARERFVFAFKCSISLG 399

Query: 72  LAVLFGMIFSKENGHWSGLTVAV 4
           LAVLFG++++K NG+WSGLTVA+
Sbjct: 400 LAVLFGILYNKNNGYWSGLTVAI 422


>ref|XP_002882620.1| hypothetical protein ARALYDRAFT_341087 [Arabidopsis lyrata subsp.
           lyrata] gi|297328460|gb|EFH58879.1| hypothetical protein
           ARALYDRAFT_341087 [Arabidopsis lyrata subsp. lyrata]
          Length = 773

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 31/77 (40%), Positives = 52/77 (67%)
 Frame = -3

Query: 234 IRNGATNKQVTNLEESVITQKQEACIRSKFLKYWCVRVSNEKLMSALKCSVSLGLAVLFG 55
           +R  + +  ++N EE +  + +   +  K     CV ++ E+ + A KCS+SLGLAVLFG
Sbjct: 346 LRQDSKSVNISNTEEEIHPEHEGLSMARKVWDILCVWMARERFVFAFKCSISLGLAVLFG 405

Query: 54  MIFSKENGHWSGLTVAV 4
           ++++K+NG+WSGLTVA+
Sbjct: 406 IMYNKKNGYWSGLTVAI 422


>emb|CAN80549.1| hypothetical protein VITISV_019389 [Vitis vinifera]
          Length = 801

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 32/57 (56%), Positives = 40/57 (70%)
 Frame = -3

Query: 174 KQEACIRSKFLKYWCVRVSNEKLMSALKCSVSLGLAVLFGMIFSKENGHWSGLTVAV 4
           KQ+          W ++V   +LM ALKCS+SLGLAVLFGMI+SKENG W+GL VA+
Sbjct: 375 KQKGSFLEGVSSXWSMKVDRSRLMPALKCSLSLGLAVLFGMIYSKENGFWAGLPVAI 431


>ref|XP_002281216.1| PREDICTED: uncharacterized protein LOC100243247 [Vitis vinifera]
          Length = 817

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 32/57 (56%), Positives = 40/57 (70%)
 Frame = -3

Query: 174 KQEACIRSKFLKYWCVRVSNEKLMSALKCSVSLGLAVLFGMIFSKENGHWSGLTVAV 4
           KQ+          W ++V   +LM ALKCS+SLGLAVLFGMI+SKENG W+GL VA+
Sbjct: 391 KQKGSFLEGVSSSWSMKVDRSRLMPALKCSLSLGLAVLFGMIYSKENGFWAGLPVAI 447


Top