BLASTX nr result
ID: Coptis21_contig00038027
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00038027
(276 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001487729.1| hypothetical protein PGUG_01105 [Meyerozyma ... 75 1e-13
ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II su... 80 2e-13
dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nig... 80 2e-13
ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II su... 80 2e-13
ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspo... 74 4e-13
>ref|XP_001487729.1| hypothetical protein PGUG_01105 [Meyerozyma guilliermondii ATCC 6260]
gi|146388850|gb|EDK37008.1| hypothetical protein
PGUG_01105 [Meyerozyma guilliermondii ATCC 6260]
Length = 1018
Score = 75.1 bits (183), Expect(2) = 1e-13
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 825 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 884
Query: 104 TSP 96
TSP
Sbjct: 885 TSP 887
Score = 25.8 bits (55), Expect(2) = 1e-13
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -1
Query: 105 NFSWVYLNLSKLQSHLSKV*SSIAKLQS 22
NFS + N +KL ++L+ V + +AKLQS
Sbjct: 920 NFSKLLANFTKLLTNLTTVLAYLAKLQS 947
Score = 75.1 bits (183), Expect(2) = 2e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 832 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 891
Query: 104 TSP 96
TSP
Sbjct: 892 TSP 894
Score = 21.9 bits (45), Expect(2) = 2e-12
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 105 NFSWVYLNLSKLQSHLSKV*SSIAKL 28
N + V L+KLQS++S + ++ AKL
Sbjct: 934 NLTTVLAYLAKLQSYISILLTNFAKL 959
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 839 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 898
Query: 104 TSP 96
TSP
Sbjct: 899 TSP 901
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 846 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 905
Query: 104 TSP 96
TSP
Sbjct: 906 TSP 908
Score = 73.9 bits (180), Expect = 1e-11
Identities = 41/63 (65%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
+Y PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 818 TYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 877
Query: 104 TSP 96
TSP
Sbjct: 878 TSP 880
Score = 70.9 bits (172), Expect = 1e-10
Identities = 40/61 (65%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 853 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 912
Query: 104 T 102
T
Sbjct: 913 T 913
Score = 70.5 bits (171), Expect = 1e-10
Identities = 40/62 (64%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Frame = -2
Query: 272 YWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSET 102
Y TSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S T
Sbjct: 812 YGVTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 871
Query: 101 SP 96
SP
Sbjct: 872 SP 873
Score = 68.6 bits (166), Expect = 5e-10
Identities = 38/63 (60%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
+Y SP Y +T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 804 AYGGASPGYGVTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 863
Query: 104 TSP 96
TSP
Sbjct: 864 TSP 866
Score = 61.6 bits (148), Expect = 6e-08
Identities = 35/63 (55%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRY--SLTAYSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
+Y TSP Y + Y TSP+Y T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 797 AYGATSPAYGGASPGYGVTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 856
Query: 104 TSP 96
TSP
Sbjct: 857 TSP 859
Score = 57.4 bits (137), Expect = 1e-06
Identities = 35/61 (57%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = -2
Query: 266 PTSP-RYSLT--AYSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSETS 99
PTSP Y T AY SP Y T P+Y+ TSPSY P SP YSPTS YS TS S TS
Sbjct: 792 PTSPFAYGATSPAYGGASPGYGVTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 851
Query: 98 P 96
P
Sbjct: 852 P 852
>ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1958
Score = 80.1 bits (196), Expect = 2e-13
Identities = 42/61 (68%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Frame = -2
Query: 275 SYWPTSPRYSLTAYSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSETS 99
SY PTSP YS T+YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S TS
Sbjct: 1636 SYSPTSPSYSHTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1695
Query: 98 P 96
P
Sbjct: 1696 P 1696
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1648 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1707
Query: 104 TSP 96
TSP
Sbjct: 1708 TSP 1710
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1655 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1714
Query: 104 TSP 96
TSP
Sbjct: 1715 TSP 1717
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1662 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1721
Query: 104 TSP 96
TSP
Sbjct: 1722 TSP 1724
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1669 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1728
Query: 104 TSP 96
TSP
Sbjct: 1729 TSP 1731
Score = 73.6 bits (179), Expect = 2e-11
Identities = 41/63 (65%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1676 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1735
Query: 104 TSP 96
+SP
Sbjct: 1736 SSP 1738
Score = 71.6 bits (174), Expect = 6e-11
Identities = 39/63 (61%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS +S + +
Sbjct: 1683 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPQYAA 1742
Query: 104 TSP 96
+SP
Sbjct: 1743 SSP 1745
Score = 68.2 bits (165), Expect = 7e-10
Identities = 41/80 (51%), Positives = 44/80 (55%), Gaps = 20/80 (25%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--------------YSPTSPSYDQTRPSYT------TSPSYIPNSPL 156
+Y PTSP+YS T YSPTSPSY T PSY+ TSPSY P SP
Sbjct: 1603 NYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPS 1662
Query: 155 YSPTSTIYSDTSLEDSETSP 96
YSPTS YS TS S TSP
Sbjct: 1663 YSPTSPSYSPTSPSYSPTSP 1682
Score = 68.2 bits (165), Expect = 7e-10
Identities = 42/82 (51%), Positives = 45/82 (54%), Gaps = 22/82 (26%)
Frame = -2
Query: 275 SYWPTSPRYSLTAYS---------------------PTSPSYDQTRPSYT-TSPSYIPNS 162
SY PTSP YS T+YS P SPSY QT PSY+ TSPSY P+S
Sbjct: 1862 SYSPTSPSYSHTSYSATSPYYSPSSSSYSPMSLSYSPRSPSYSQTSPSYSPTSPSYSPSS 1921
Query: 161 PLYSPTSTIYSDTSLEDSETSP 96
P YSPTS YS TS S TSP
Sbjct: 1922 PSYSPTSPSYSPTSPSYSPTSP 1943
Score = 66.6 bits (161), Expect = 2e-09
Identities = 36/55 (65%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTS 120
SY P SP YS T+ YSPTSPSY + PSY+ TSPSY P SP YSPTS YS TS
Sbjct: 1895 SYSPRSPSYSQTSPSYSPTSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1949
Score = 62.8 bits (151), Expect = 3e-08
Identities = 34/52 (65%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYS 129
SY TSP YS T+ YSP+SPSY T PSY+ TSPSY P SP YSPTS YS
Sbjct: 1902 SYSQTSPSYSPTSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPTYS 1953
Score = 60.5 bits (145), Expect = 1e-07
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTAYSPTSPSYDQTRPSYTT---SPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY P+SP YS T +S SP Y T P+Y+ SP Y P+SP YSPTS Y+ TS S
Sbjct: 1806 SYSPSSPVYSPTNFSMASPRYSPTSPTYSPGVGSPHYSPSSPSYSPTSPNYTPTSPSYSP 1865
Query: 104 TSP 96
TSP
Sbjct: 1866 TSP 1868
Score = 60.5 bits (145), Expect = 1e-07
Identities = 35/67 (52%), Positives = 41/67 (61%), Gaps = 8/67 (11%)
Frame = -2
Query: 272 YWPTSPRYSLTA--YSPTSPSYDQTRPSYT------TSPSYIPNSPLYSPTSTIYSDTSL 117
Y P+SP YS T+ Y+PTSPSY T PSY+ TSP Y P+S YSP S YS S
Sbjct: 1842 YSPSSPSYSPTSPNYTPTSPSYSPTSPSYSHTSYSATSPYYSPSSSSYSPMSLSYSPRSP 1901
Query: 116 EDSETSP 96
S+TSP
Sbjct: 1902 SYSQTSP 1908
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 22/83 (26%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT--------------------TSPSYIPNS 162
SY PTSP YS T+ YSP+SP Y + PSYT SP+Y P S
Sbjct: 1718 SYSPTSPSYSPTSPSYSPSSPQYAASSPSYTPSATSGTSNYKYSPTSPSLAVSPTYSPTS 1777
Query: 161 PLYSPTSTIYSDTSLEDSETSPG 93
P+YSP++ YS +SL+ + + G
Sbjct: 1778 PMYSPSNASYSPSSLQHTPNAGG 1800
>dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
Length = 1862
Score = 80.1 bits (196), Expect = 2e-13
Identities = 42/61 (68%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Frame = -2
Query: 275 SYWPTSPRYSLTAYSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSETS 99
SY PTSP YS T+YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S TS
Sbjct: 1636 SYSPTSPSYSHTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1695
Query: 98 P 96
P
Sbjct: 1696 P 1696
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1648 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1707
Query: 104 TSP 96
TSP
Sbjct: 1708 TSP 1710
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1655 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1714
Query: 104 TSP 96
TSP
Sbjct: 1715 TSP 1717
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1662 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1721
Query: 104 TSP 96
TSP
Sbjct: 1722 TSP 1724
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1669 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1728
Query: 104 TSP 96
TSP
Sbjct: 1729 TSP 1731
Score = 73.6 bits (179), Expect = 2e-11
Identities = 41/63 (65%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1676 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1735
Query: 104 TSP 96
+SP
Sbjct: 1736 SSP 1738
Score = 71.6 bits (174), Expect = 6e-11
Identities = 39/63 (61%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS +S + +
Sbjct: 1683 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPQYTA 1742
Query: 104 TSP 96
+SP
Sbjct: 1743 SSP 1745
Score = 68.2 bits (165), Expect = 7e-10
Identities = 41/80 (51%), Positives = 44/80 (55%), Gaps = 20/80 (25%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--------------YSPTSPSYDQTRPSYT------TSPSYIPNSPL 156
+Y PTSP+YS T YSPTSPSY T PSY+ TSPSY P SP
Sbjct: 1603 NYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPS 1662
Query: 155 YSPTSTIYSDTSLEDSETSP 96
YSPTS YS TS S TSP
Sbjct: 1663 YSPTSPSYSPTSPSYSPTSP 1682
Score = 55.8 bits (133), Expect = 3e-06
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ +SP Y +SP Y+P S ++ + S
Sbjct: 1704 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPQYTASSPSYTP-SAASGASNYKYSP 1762
Query: 104 TSP 96
TSP
Sbjct: 1763 TSP 1765
Score = 55.1 bits (131), Expect = 6e-06
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 22/76 (28%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT--------------------TSPSYIPNS 162
SY PTSP YS T+ YSP+SP Y + PSYT SP+Y P S
Sbjct: 1718 SYSPTSPSYSPTSPSYSPSSPQYTASSPSYTPSAASGASNYKYSPTSPSLAVSPTYSPTS 1777
Query: 161 PLYSPTSTIYSDTSLE 114
P+YSP++ YS +S++
Sbjct: 1778 PMYSPSNASYSPSSVQ 1793
>ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1862
Score = 80.1 bits (196), Expect = 2e-13
Identities = 42/61 (68%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Frame = -2
Query: 275 SYWPTSPRYSLTAYSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSETS 99
SY PTSP YS T+YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S TS
Sbjct: 1636 SYSPTSPSYSHTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1695
Query: 98 P 96
P
Sbjct: 1696 P 1696
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1648 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1707
Query: 104 TSP 96
TSP
Sbjct: 1708 TSP 1710
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1655 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1714
Query: 104 TSP 96
TSP
Sbjct: 1715 TSP 1717
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1662 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1721
Query: 104 TSP 96
TSP
Sbjct: 1722 TSP 1724
Score = 75.1 bits (183), Expect = 6e-12
Identities = 42/63 (66%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1669 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1728
Query: 104 TSP 96
TSP
Sbjct: 1729 TSP 1731
Score = 73.6 bits (179), Expect = 2e-11
Identities = 41/63 (65%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1676 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1735
Query: 104 TSP 96
+SP
Sbjct: 1736 SSP 1738
Score = 71.6 bits (174), Expect = 6e-11
Identities = 39/63 (61%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS +S + +
Sbjct: 1683 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPQYTA 1742
Query: 104 TSP 96
+SP
Sbjct: 1743 SSP 1745
Score = 68.2 bits (165), Expect = 7e-10
Identities = 41/80 (51%), Positives = 44/80 (55%), Gaps = 20/80 (25%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--------------YSPTSPSYDQTRPSYT------TSPSYIPNSPL 156
+Y PTSP+YS T YSPTSPSY T PSY+ TSPSY P SP
Sbjct: 1603 NYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPS 1662
Query: 155 YSPTSTIYSDTSLEDSETSP 96
YSPTS YS TS S TSP
Sbjct: 1663 YSPTSPSYSPTSPSYSPTSP 1682
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS T+ YSPTSPSY T PSY+ +SP Y +SP Y+P++T ++ + S
Sbjct: 1704 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPQYTASSPSYTPSAT-SGASNYKYSP 1762
Query: 104 TSP 96
TSP
Sbjct: 1763 TSP 1765
Score = 55.1 bits (131), Expect = 6e-06
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 22/76 (28%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT--------------------TSPSYIPNS 162
SY PTSP YS T+ YSP+SP Y + PSYT SP+Y P S
Sbjct: 1718 SYSPTSPSYSPTSPSYSPSSPQYTASSPSYTPSATSGASNYKYSPTSPSLAVSPTYSPTS 1777
Query: 161 PLYSPTSTIYSDTSLE 114
P+YSP++ YS +S++
Sbjct: 1778 PMYSPSNASYSPSSVQ 1793
>ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
gi|359747991|emb|CCE91121.1| hypothetical protein
TDEL_0C02320 [Torulaspora delbrueckii]
Length = 1727
Score = 73.9 bits (180), Expect(2) = 4e-13
Identities = 41/63 (65%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY P+SP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1534 SYSPSSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1593
Query: 104 TSP 96
TSP
Sbjct: 1594 TSP 1596
Score = 25.0 bits (53), Expect(2) = 4e-13
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 76 QATVPPLQGIVQHRQVTVLL 17
QATV PL+ I H QV V L
Sbjct: 1617 QATVQPLRAIALHHQVIVQL 1636
Score = 73.9 bits (180), Expect = 1e-11
Identities = 41/63 (65%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
+Y PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1541 NYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1600
Query: 104 TSP 96
TSP
Sbjct: 1601 TSP 1603
Score = 73.6 bits (179), Expect = 2e-11
Identities = 41/63 (65%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
SY PTSP YS ++ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1527 SYSPTSPSYSPSSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1586
Query: 104 TSP 96
TSP
Sbjct: 1587 TSP 1589
Score = 71.2 bits (173), Expect = 8e-11
Identities = 39/63 (61%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSE 105
+Y PTSP YS T+ YSP+SP+Y T PSY+ TSPSY P SP YSPTS YS TS S
Sbjct: 1520 AYSPTSPSYSPTSPSYSPSSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1579
Query: 104 TSP 96
TSP
Sbjct: 1580 TSP 1582
Score = 67.8 bits (164), Expect = 9e-10
Identities = 37/60 (61%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Frame = -2
Query: 266 PTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSETSP 96
P+SP YS T+ YSPTSPSY + P+Y+ TSPSY P SP YSPTS YS TS S TSP
Sbjct: 1516 PSSPAYSPTSPSYSPTSPSYSPSSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1575
Score = 67.0 bits (162), Expect = 1e-09
Identities = 36/52 (69%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYS 129
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSPTS YS
Sbjct: 1555 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1606
Score = 61.6 bits (148), Expect = 6e-08
Identities = 34/61 (55%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Frame = -2
Query: 266 PTSPRY---SLTAYSPTSPSYDQTRPSYT-TSPSYIPNSPLYSPTSTIYSDTSLEDSETS 99
P+SP + S +SP+SP+Y T PSY+ TSPSY P+SP YSPTS YS TS S TS
Sbjct: 1501 PSSPGFGGVSSPGFSPSSPAYSPTSPSYSPTSPSYSPSSPNYSPTSPSYSPTSPSYSPTS 1560
Query: 98 P 96
P
Sbjct: 1561 P 1561
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/46 (69%), Positives = 34/46 (73%), Gaps = 3/46 (6%)
Frame = -2
Query: 275 SYWPTSPRYSLTA--YSPTSPSYDQTRPSYT-TSPSYIPNSPLYSP 147
SY PTSP YS T+ YSPTSPSY T PSY+ TSPSY P SP YSP
Sbjct: 1562 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1607