BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038013
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containi...   101   7e-20
ref|XP_002520500.1| pentatricopeptide repeat-containing protein,...   101   7e-20
ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containi...   100   9e-20
emb|CBI16054.3| unnamed protein product [Vitis vinifera]              100   2e-19
ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containi...   100   2e-19

>ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449474033|ref|XP_004154055.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449510921|ref|XP_004163811.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  101 bits (251), Expect = 7e-20
 Identities = 55/103 (53%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
 Frame = -3

Query: 302 PFPPKHTNTKTPTFSSLKTSPQPQQHSNNNRLIQFLCKRNNLKHALKILSNEPNPTQQTY 123
           P  P+++ +K  + SS   +P    +SNNN LIQ LCK+ NLK AL +LS+E NPTQQT 
Sbjct: 14  PSSPRYSTSKL-SVSSFSFNPSTPPNSNNNHLIQSLCKQGNLKQALYLLSHESNPTQQTC 72

Query: 122 EHLILSCTR---LSDGVLVHHHVIDNGFDQDSFLATKVINMYT 3
           E LILS  R   LSD + VH  ++D GFDQD FLATK+INM++
Sbjct: 73  ELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFS 115


>ref|XP_002520500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540342|gb|EEF41913.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 414

 Score =  101 bits (251), Expect = 7e-20
 Identities = 53/114 (46%), Positives = 70/114 (61%), Gaps = 15/114 (13%)
 Frame = -3

Query: 299 FPPKHTNTKTPTFSSLKTSPQPQQH------------SNNNRLIQFLCKRNNLKHALKIL 156
           F      T+ P+ S+  + P P+              +N+N+LIQ LCK+ NLK AL +L
Sbjct: 4   FHSPQATTQPPSHSTFFSRPTPKPPICFVNLNPTIPTANSNKLIQSLCKQGNLKQALNLL 63

Query: 155 SNEPNPTQQTYEHLILSCTRLS---DGVLVHHHVIDNGFDQDSFLATKVINMYT 3
            NEP+P Q TYE L+LSCT  +   D   VH H++DNGFDQD FLATK+INMY+
Sbjct: 64  CNEPDPAQHTYELLLLSCTHQNSFLDAQFVHQHLLDNGFDQDPFLATKLINMYS 117


>ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  100 bits (250), Expect = 9e-20
 Identities = 56/100 (56%), Positives = 70/100 (70%), Gaps = 6/100 (6%)
 Frame = -3

Query: 287 HTNTKTP-TFSSLKTSPQ--PQQHSNNNRLIQFLCKRNNLKHALKILSNEPNPTQQTYEH 117
           H +++ P +F SL  S       +SNNN+LIQ LCK  NLK AL +L  EPNPTQQT+EH
Sbjct: 24  HVSSRVPVSFVSLNPSANLINDINSNNNQLIQSLCKGGNLKQALHLLCCEPNPTQQTFEH 83

Query: 116 LILSCTR---LSDGVLVHHHVIDNGFDQDSFLATKVINMY 6
           LI SC +   LS G+ VH  ++D+GFDQD FLATK+INMY
Sbjct: 84  LIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMY 123


>emb|CBI16054.3| unnamed protein product [Vitis vinifera]
          Length = 476

 Score =  100 bits (248), Expect = 2e-19
 Identities = 57/112 (50%), Positives = 72/112 (64%), Gaps = 9/112 (8%)
 Frame = -3

Query: 311 PFLPFP---PKHTNTKTPTFSSLKTSPQPQQH---SNNNRLIQFLCKRNNLKHALKILSN 150
           P LP P   P   + K     +L+ S   + +   +NNN LIQ LCK+ NL  AL++LS 
Sbjct: 13  PHLPKPFHKPTAISPKPQCCLALRPSTTTRSNGDSNNNNPLIQSLCKQGNLNQALQVLSQ 72

Query: 149 EPNPTQQTYEHLILSCTR---LSDGVLVHHHVIDNGFDQDSFLATKVINMYT 3
           EPNPTQ TYE LILSCTR   L  G+ +H H+I +G DQD FLATK+INMY+
Sbjct: 73  EPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYS 124


>ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  100 bits (248), Expect = 2e-19
 Identities = 57/112 (50%), Positives = 72/112 (64%), Gaps = 9/112 (8%)
 Frame = -3

Query: 311 PFLPFP---PKHTNTKTPTFSSLKTSPQPQQH---SNNNRLIQFLCKRNNLKHALKILSN 150
           P LP P   P   + K     +L+ S   + +   +NNN LIQ LCK+ NL  AL++LS 
Sbjct: 13  PHLPKPFHKPTAISPKPQCCLALRPSTTTRSNGDSNNNNPLIQSLCKQGNLNQALQVLSQ 72

Query: 149 EPNPTQQTYEHLILSCTR---LSDGVLVHHHVIDNGFDQDSFLATKVINMYT 3
           EPNPTQ TYE LILSCTR   L  G+ +H H+I +G DQD FLATK+INMY+
Sbjct: 73  EPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYS 124