BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037907
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520828.1| pentatricopeptide repeat-containing protein,...   139   3e-31
ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containi...   138   4e-31
emb|CBI16742.3| unnamed protein product [Vitis vinifera]              132   3e-29
emb|CBI40215.3| unnamed protein product [Vitis vinifera]              113   2e-23
ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containi...   113   2e-23

>ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539959|gb|EEF41537.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 656

 Score =  139 bits (349), Expect = 3e-31
 Identities = 70/113 (61%), Positives = 86/113 (76%)
 Frame = +2

Query: 5   NIRITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVV 184
           N++I++LG   KVKEAR +FD+M  RD V+Y SMI VYLKN DL  AE LF+ IP  NVV
Sbjct: 55  NVKISNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVV 114

Query: 185 ASSAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
           A SAMI GY +AGR++ AR+VF+ M ERNVF+WT L+SGY +IGNV EA  LF
Sbjct: 115 ADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLF 167



 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 39/112 (34%), Positives = 71/112 (63%)
 Frame = +2

Query: 14  ITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVASS 193
           I+   R  ++ +AR +FD+M+ R+  ++ S+++ Y K G++  A +LF  +P +NVV+ +
Sbjct: 120 ISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVSWT 179

Query: 194 AMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLFYR 349
             + GYA+ G I++AR +FN M E+N+  WT ++  Y+    + EA  LFY+
Sbjct: 180 TAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQ 231



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 36/104 (34%), Positives = 59/104 (56%)
 Frame = +2

Query: 5   NIRITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVV 184
           NI I+     N++ EA  LF+ M  R+ V++ +++    +NG +  A K F  +P +++ 
Sbjct: 241 NIMISGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMMELARKYFDHMPTKDIA 300

Query: 185 ASSAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIG 316
           A +AMI  Y   G + +A  +FN M E+N+ +W  LI GY R G
Sbjct: 301 AWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNG 344



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 33/101 (32%), Positives = 62/101 (61%)
 Frame = +2

Query: 41  VKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVASSAMIDGYAKA 220
           + EAR++F++M  ++ + + +M+  Y++N ++  A +LF  +P  N+ + + MI G   A
Sbjct: 191 IDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNLYSWNIMISGCINA 250

Query: 221 GRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
            R+ +A ++FN M +RN  +WT L++G  R G +  AR  F
Sbjct: 251 NRLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMMELARKYF 291



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 32/101 (31%), Positives = 60/101 (59%)
 Frame = +2

Query: 41  VKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVASSAMIDGYAKA 220
           V EA  LF++M  ++ V++ + +  Y +NG +  A  +F  +P +N++A +AM+  Y + 
Sbjct: 160 VDEAMRLFNQMPEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVEN 219

Query: 221 GRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
             I++A  +F  M +RN+++W  +ISG +    + EA  LF
Sbjct: 220 DEIDEAFELFYQMPQRNLYSWNIMISGCINANRLNEAIQLF 260


>ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09410-like [Glycine max]
          Length = 669

 Score =  138 bits (348), Expect = 4e-31
 Identities = 69/113 (61%), Positives = 83/113 (73%)
 Frame = +2

Query: 5   NIRITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVV 184
           N+ IT LGR  K+ EAR LFD+M  RD+V+Y SMI VYLKN DL  AE +FK +P  NVV
Sbjct: 69  NVEITILGRHGKLDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKEMPQRNVV 128

Query: 185 ASSAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
           A SAMIDGYAK GR++DAR+VF+ M +RN F+WT LISGY   G + EA  LF
Sbjct: 129 AESAMIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLF 181



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 41/113 (36%), Positives = 69/113 (61%)
 Frame = +2

Query: 5   NIRITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVV 184
           NI I+   R N+V EA  LF+ M  R++V++ +M++   +N  +G A K F ++P +++ 
Sbjct: 255 NIMISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYFDLMPYKDMA 314

Query: 185 ASSAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
           A +AMI      G +++AR++F+ + E+NV +W  +I GY R   V EA  LF
Sbjct: 315 AWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALNLF 367



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 38/102 (37%), Positives = 63/102 (61%)
 Frame = +2

Query: 38  KVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVASSAMIDGYAK 217
           K++EA +LFD+M  R+ V++  ++  + +NG +  A + F ++P +N++A +AM+  Y  
Sbjct: 173 KIEEALHLFDQMPERNVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLD 232

Query: 218 AGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
            G   +A ++F  M ERNV +W  +ISG LR   V EA  LF
Sbjct: 233 NGCFSEAYKLFLEMPERNVRSWNIMISGCLRANRVDEAIGLF 274



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 30/96 (31%), Positives = 50/96 (52%)
 Frame = +2

Query: 14  ITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVASS 193
           +    R   +  A   F  M  ++ + + +M+  YL NG    A KLF  +P  NV + +
Sbjct: 196 VLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPERNVRSWN 255

Query: 194 AMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISG 301
            MI G  +A R+++A  +F  M +RN  +WT ++SG
Sbjct: 256 IMISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSG 291


>emb|CBI16742.3| unnamed protein product [Vitis vinifera]
          Length = 674

 Score =  132 bits (332), Expect = 3e-29
 Identities = 65/114 (57%), Positives = 83/114 (72%)
 Frame = +2

Query: 2   CNIRITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENV 181
           CNI+I+ LGR   V+ AR LFD+M H DNV+Y +MI  YLKN +L  AEKLF+ +P   +
Sbjct: 72  CNIKISQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTI 131

Query: 182 VASSAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
           VA SAMIDGYAKAG ++ A++VF+ M + NVF+WT LISGY R G V +A  LF
Sbjct: 132 VAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLF 185



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 38/111 (34%), Positives = 65/111 (58%)
 Frame = +2

Query: 14  ITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVASS 193
           I    +   +  A+ +FD M+  +  ++ S+I+ Y ++G +  A +LF  +P +NVV+ +
Sbjct: 138 IDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWT 197

Query: 194 AMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLFY 346
            M+ GYA+ G I+ AR VFN M E+N  +WT ++  Y+  G   EA  LF+
Sbjct: 198 TMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFH 248



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 37/111 (33%), Positives = 68/111 (61%)
 Frame = +2

Query: 14  ITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVASS 193
           I+   R+ +V +A  LFD+M  ++ V++ +M+  Y +NG +  A  +F  +P +N ++ +
Sbjct: 169 ISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWT 228

Query: 194 AMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLFY 346
           AM+  Y   GR ++A ++F+ M +RN+++W  +ISG L    V EA  LF+
Sbjct: 229 AMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFH 279



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 33/110 (30%), Positives = 60/110 (54%)
 Frame = +2

Query: 14  ITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVASS 193
           +    R   + +AR++F++M  ++ +++ +M+  Y+ NG    A KLF  +P  N+ + +
Sbjct: 200 VLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWN 259

Query: 194 AMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
            MI G     R+ +A ++F+ M  RN  +WT ++SG  R G    AR  F
Sbjct: 260 TMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYF 309



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/91 (36%), Positives = 50/91 (54%)
 Frame = +2

Query: 38  KVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVASSAMIDGYAK 217
           +V EA  LF  M  R+ V++  M++   +NG    A + F  +P +++ A +AMI  Y  
Sbjct: 270 RVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVD 329

Query: 218 AGRIEDARRVFNGMRERNVFTWTCLISGYLR 310
              I +A  +FN M ERN+ TW  +I GY R
Sbjct: 330 ECLIVEASELFNLMTERNIVTWNAMIDGYAR 360


>emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  113 bits (282), Expect = 2e-23
 Identities = 55/114 (48%), Positives = 77/114 (67%)
 Frame = +2

Query: 2   CNIRITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENV 181
           CN RI  LGR  +V+EAR +F++M+ RD V++ SMIN Y +NG +  A  LF    G+N+
Sbjct: 42  CNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNI 101

Query: 182 VASSAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
              + ++ GYAK GRIE+AR VF  M ERNV +W  +ISGY++ G++  AR LF
Sbjct: 102 RTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLF 155



 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 43/114 (37%), Positives = 76/114 (66%)
 Frame = +2

Query: 8   IRITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVA 187
           I +T   +E +++EAR +F+ M  R+ V++ +MI+ Y++NGDL +A KLF  +P +NV +
Sbjct: 106 ILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVAS 165

Query: 188 SSAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLFYR 349
            ++++ GY    R+ +AR +F+ M ERN  +W  +ISGY+ I + +EA  +F +
Sbjct: 166 WNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVK 219



 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 40/113 (35%), Positives = 67/113 (59%)
 Frame = +2

Query: 5   NIRITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVV 184
           N  I    +  KV EAR LFD  + ++  T+  ++  Y K G +  A ++F+ +   NVV
Sbjct: 74  NSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVV 133

Query: 185 ASSAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
           + +AMI GY + G +++AR++F+ M E+NV +W  +++GY     + EAR LF
Sbjct: 134 SWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELF 186


>ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  113 bits (282), Expect = 2e-23
 Identities = 55/114 (48%), Positives = 77/114 (67%)
 Frame = +2

Query: 2   CNIRITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENV 181
           CN RI  LGR  +V+EAR +F++M+ RD V++ SMIN Y +NG +  A  LF    G+N+
Sbjct: 174 CNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNI 233

Query: 182 VASSAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
              + ++ GYAK GRIE+AR VF  M ERNV +W  +ISGY++ G++  AR LF
Sbjct: 234 RTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLF 287



 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 43/114 (37%), Positives = 76/114 (66%)
 Frame = +2

Query: 8   IRITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVA 187
           I +T   +E +++EAR +F+ M  R+ V++ +MI+ Y++NGDL +A KLF  +P +NV +
Sbjct: 238 ILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVAS 297

Query: 188 SSAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLFYR 349
            ++++ GY    R+ +AR +F+ M ERN  +W  +ISGY+ I + +EA  +F +
Sbjct: 298 WNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVK 351



 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 40/113 (35%), Positives = 67/113 (59%)
 Frame = +2

Query: 5   NIRITSLGRENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVV 184
           N  I    +  KV EAR LFD  + ++  T+  ++  Y K G +  A ++F+ +   NVV
Sbjct: 206 NSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVV 265

Query: 185 ASSAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
           + +AMI GY + G +++AR++F+ M E+NV +W  +++GY     + EAR LF
Sbjct: 266 SWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELF 318



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 34/107 (31%), Positives = 61/107 (57%)
 Frame = +2

Query: 29  RENKVKEARNLFDKMLHRDNVTYGSMINVYLKNGDLGSAEKLFKVIPGENVVASSAMIDG 208
           R   +  A + F+ M  R+  ++ +MI  + + G L  A +L++ +P + V   +AM+  
Sbjct: 408 RNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTA 467

Query: 209 YAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLFYR 349
           YA+ GRI+ AR +F+ +   NV  W  +I+GY + G + EA+ LF +
Sbjct: 468 YAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQK 514



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
 Frame = +2

Query: 14  ITSLGRENKVKEARNLFDKMLHRDNVTYGSMI-NVYLKNGDLGSAEKLFKVIPGENVVAS 190
           IT L     +   R +  K  +  +V  GS I N Y +NG L  A   F+ +P  N  + 
Sbjct: 371 ITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSW 430

Query: 191 SAMIDGYAKAGRIEDARRVFNGMRERNVFTWTCLISGYLRIGNVYEARWLF 343
           + MI  +A+ GR++DA +++  + E+ V T T +++ Y ++G + +AR +F
Sbjct: 431 TTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIF 481