BLASTX nr result
ID: Coptis21_contig00037865
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00037865 (398 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002518629.1| hypothetical protein RCOM_1307020 [Ricinus c... 65 6e-09 ref|XP_003537529.1| PREDICTED: 30S ribosomal protein S1 homolog ... 57 2e-06 ref|XP_002264430.1| PREDICTED: 30S ribosomal protein S1 homolog ... 56 3e-06 emb|CAN68483.1| hypothetical protein VITISV_006784 [Vitis vinifera] 56 3e-06 gb|AFK42776.1| unknown [Medicago truncatula] 55 6e-06 >ref|XP_002518629.1| hypothetical protein RCOM_1307020 [Ricinus communis] gi|223542228|gb|EEF43771.1| hypothetical protein RCOM_1307020 [Ricinus communis] Length = 365 Score = 65.1 bits (157), Expect = 6e-09 Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 1/107 (0%) Frame = +1 Query: 79 AAVGSVTNLSFLTTNDAYSINHPFFTTTSSC-LLRKTYLQQRLQCNTRVSVSGNIETEGQ 255 A+V + + LS L T++ S+ H T SSC L K+ + + RVSVS N Sbjct: 9 ASVSAHSLLSQLFTSNDASLTHTLSTHFSSCKLFHKS--RHSISAAARVSVSENS----- 61 Query: 256 VDEQPQGVGIGEDAPETTDSSRQSRRYADWKAARAYKESGAIYEGRI 396 ++ G ED+P D+ RQ+RR ADWKAARAY++SG+I+EGRI Sbjct: 62 -NDSATTTGFLEDSP---DAIRQTRRSADWKAARAYRDSGSIFEGRI 104 >ref|XP_003537529.1| PREDICTED: 30S ribosomal protein S1 homolog [Glycine max] Length = 383 Score = 56.6 bits (135), Expect = 2e-06 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 3/110 (2%) Frame = +1 Query: 76 SAAVGSVTNLSFLTTNDAYSINH--PFFTTTSSCLLRKTYLQQRLQCNTRVSVSGNIETE 249 SA++GS T++SFL+T+ + S +H PF T + + + L VS SGN + Sbjct: 5 SASLGSFTSISFLSTSQSQSQSHLSPFKLTVKTPWQWQHH--HYLTSKVLVSASGNTQIP 62 Query: 250 G-QVDEQPQGVGIGEDAPETTDSSRQSRRYADWKAARAYKESGAIYEGRI 396 ++ ++P P+ D RQ+RR +DWKAA+ Y++S IY GR+ Sbjct: 63 NTELLQRPT-------PPDPLDDVRQARRSSDWKAAKTYQDSKLIYNGRV 105 >ref|XP_002264430.1| PREDICTED: 30S ribosomal protein S1 homolog [Vitis vinifera] gi|296089601|emb|CBI39420.3| unnamed protein product [Vitis vinifera] Length = 390 Score = 56.2 bits (134), Expect = 3e-06 Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Frame = +1 Query: 76 SAAVGSVTNLSFLTT----NDAYSINHPFFTTTSSCLLRKTYLQQRLQCNTRVSVSGNIE 243 S A GSVT LS L+ + + + N + + Y + L+ + + + Sbjct: 4 SGASGSVTGLSILSKLFCWDSSSNTNSSASLLINPSKISSFYRRSPLRRSPFHIATARVS 63 Query: 244 TEGQVDEQPQGVGIGEDAPETTDSSRQSRRYADWKAARAYKESGAIYEGRI 396 TEG EQ + P D+ RQ+RR ADWKAARA+ ESG IYEGRI Sbjct: 64 TEGS--EQATAGVVEGSPPPPFDAIRQARRSADWKAARAHLESGFIYEGRI 112 >emb|CAN68483.1| hypothetical protein VITISV_006784 [Vitis vinifera] Length = 418 Score = 56.2 bits (134), Expect = 3e-06 Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Frame = +1 Query: 76 SAAVGSVTNLSFLTT----NDAYSINHPFFTTTSSCLLRKTYLQQRLQCNTRVSVSGNIE 243 S A GSVT LS L+ + + + N + + Y + L+ + + + Sbjct: 4 SGASGSVTGLSILSKLFCWDSSSNTNSSASLLINPSKISSFYRRSPLRRSPFHIATARVS 63 Query: 244 TEGQVDEQPQGVGIGEDAPETTDSSRQSRRYADWKAARAYKESGAIYEGRI 396 TEG EQ + P D+ RQ+RR ADWKAARA+ ESG IYEGRI Sbjct: 64 TEGS--EQATAGVVEGSPPPPFDAIRQARRSADWKAARAHLESGFIYEGRI 112 >gb|AFK42776.1| unknown [Medicago truncatula] Length = 399 Score = 55.1 bits (131), Expect = 6e-06 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 14/121 (11%) Frame = +1 Query: 76 SAAVGSVTNLSFLTTNDAY-------SINHPF------FTTTSSCLLRKTYLQQRLQCNT 216 SA +GS +SFL+++ + SI +PF C Y N Sbjct: 5 SATLGSFGAISFLSSSQSQQHDPSSSSIVNPFNFPKCPHKLPPPCQWHPHYRHH----NP 60 Query: 217 RVSVSGNIETEG-QVDEQPQGVGIGEDAPETTDSSRQSRRYADWKAARAYKESGAIYEGR 393 ++ VS + + +DE G+ AP++ D+ RQ+RR +DWKAA AY++SG IY GR Sbjct: 61 KIMVSSSSSSNNTHIDEFDSGLLQRPSAPDSYDALRQARRSSDWKAANAYRDSGLIYNGR 120 Query: 394 I 396 + Sbjct: 121 V 121