BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037854
         (435 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
ref|XP_002511542.1| pentatricopeptide repeat-containing protein,...   141   6e-32
emb|CBI38781.3| unnamed protein product [Vitis vinifera]               85   5e-15
ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containi...    85   5e-15
emb|CBI27814.3| unnamed protein product [Vitis vinifera]               83   3e-14

>ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  145 bits (367), Expect = 3e-33
 Identities = 74/141 (52%), Positives = 98/141 (69%)
 Frame = -3

Query: 430 LINLLQSSLHQNHLKQIHTLIITKHVNLTPLFLKKLLNPPIINYARKVFDHITDPDSFIY 251
           LI+LL  SL  N LKQI  LII K+++LTPLF+++LLN   I YAR+VFD I  PD  ++
Sbjct: 5   LIDLLHCSLPINQLKQIQALIIIKYLSLTPLFIRRLLNASFIQYARQVFDQIPHPDQGVH 64

Query: 250 VSMISTYSKLYLNHEAIHTFFSMHGKKVKVGLTCFAFPPVFKSCALLLKSKEGRQVHCVV 71
            S I+ YS+L LN+EA+ TF SMH   V++   CF  PP+FKSCA LL    G+QVH +V
Sbjct: 65  CSFITAYSRLSLNNEALRTFVSMHQNNVRI--VCFTIPPIFKSCASLLAIDVGKQVHSLV 122

Query: 70  IKNGFGCYMYVQSGLIDFYAK 8
           I+ GF   ++ Q+ LI+FYAK
Sbjct: 123 IRYGFHSSVFCQNALINFYAK 143


>ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550657|gb|EEF52144.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 434

 Score =  141 bits (355), Expect = 6e-32
 Identities = 72/143 (50%), Positives = 97/143 (67%)
 Frame = -3

Query: 430 LINLLQSSLHQNHLKQIHTLIITKHVNLTPLFLKKLLNPPIINYARKVFDHITDPDSFIY 251
           LI LL S L  N LKQIH+LII KH +L  + ++KLLN   I+YAR++FD +  P   +Y
Sbjct: 5   LITLLHSPLQINQLKQIHSLIIIKHPSLATVLVRKLLNLSDIDYARQLFDQVPQPGQILY 64

Query: 250 VSMISTYSKLYLNHEAIHTFFSMHGKKVKVGLTCFAFPPVFKSCALLLKSKEGRQVHCVV 71
            S+ISTYSKL L+ +A+ TFFSMH    +  L+CF  PPV K+C+ LL    G+QVH ++
Sbjct: 65  NSLISTYSKLSLHKDALKTFFSMHHSDTR--LSCFTGPPVIKACSSLLAIDVGKQVHSLI 122

Query: 70  IKNGFGCYMYVQSGLIDFYAKSG 2
           +  G  C +YVQ+ L+DFYAK G
Sbjct: 123 VICGIDCNVYVQTSLMDFYAKIG 145


>emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
 Frame = -3

Query: 388 KQIHTLIITKHVNLTPLFLKKLLN------PPIINYARKVFDHITDPDSFIYVSMISTYS 227
           KQ H L++  H+   PLF  KL++         +NYARK+F  + +PD FI  +MI  Y+
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 226 KLYLNHEAIHTFFSMHGKKVKVGLTCFAFPPVFKSCALLLKSKEGRQVHCVVIKNGFGCY 47
           +    +EA+  ++ M  + V V    + +P V  +CA L   K GR+ HC V+KNGFG  
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDN--YTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSD 145

Query: 46  MYVQSGLIDFYAKSG 2
           ++V + LI FY   G
Sbjct: 146 LFVINALIQFYHNCG 160


>ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
 Frame = -3

Query: 388 KQIHTLIITKHVNLTPLFLKKLLN------PPIINYARKVFDHITDPDSFIYVSMISTYS 227
           KQ H L++  H+   PLF  KL++         +NYARK+F  + +PD FI  +MI  Y+
Sbjct: 28  KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87

Query: 226 KLYLNHEAIHTFFSMHGKKVKVGLTCFAFPPVFKSCALLLKSKEGRQVHCVVIKNGFGCY 47
           +    +EA+  ++ M  + V V    + +P V  +CA L   K GR+ HC V+KNGFG  
Sbjct: 88  RSQNPYEAVSLYYFMVERGVPVDN--YTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSD 145

Query: 46  MYVQSGLIDFYAKSG 2
           ++V + LI FY   G
Sbjct: 146 LFVINALIQFYHNCG 160


>emb|CBI27814.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
 Frame = -3

Query: 391 LKQIHTLIITKHVNLTPLFLKKLLNP-----PIINYARKVFDHITDPDSFIYVSMISTYS 227
           L +IH L++T       L   KL+       P ++YARK+FD +   D F++ ++I  Y+
Sbjct: 45  LSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYA 104

Query: 226 KLYLNHEAIHTFFSMHGKKVKVGL--TCFAFPPVFKSCALLLKSKEGRQVHCVVIKNGFG 53
                 EA+  + +MHG     GL    + FP V +SCA+L   +EG++VHC ++K+GF 
Sbjct: 105 DAGPCEEALALYSNMHG----AGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFD 160

Query: 52  CYMYVQSGLIDFYAKSG 2
             ++VQS L+  Y++SG
Sbjct: 161 SDVFVQSSLVAMYSQSG 177