BLASTX nr result
ID: Coptis21_contig00037854
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00037854 (435 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containi... 145 3e-33 ref|XP_002511542.1| pentatricopeptide repeat-containing protein,... 141 6e-32 emb|CBI38781.3| unnamed protein product [Vitis vinifera] 85 5e-15 ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containi... 85 5e-15 emb|CBI27814.3| unnamed protein product [Vitis vinifera] 83 3e-14 >ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] Length = 618 Score = 145 bits (367), Expect = 3e-33 Identities = 74/141 (52%), Positives = 98/141 (69%) Frame = -3 Query: 430 LINLLQSSLHQNHLKQIHTLIITKHVNLTPLFLKKLLNPPIINYARKVFDHITDPDSFIY 251 LI+LL SL N LKQI LII K+++LTPLF+++LLN I YAR+VFD I PD ++ Sbjct: 5 LIDLLHCSLPINQLKQIQALIIIKYLSLTPLFIRRLLNASFIQYARQVFDQIPHPDQGVH 64 Query: 250 VSMISTYSKLYLNHEAIHTFFSMHGKKVKVGLTCFAFPPVFKSCALLLKSKEGRQVHCVV 71 S I+ YS+L LN+EA+ TF SMH V++ CF PP+FKSCA LL G+QVH +V Sbjct: 65 CSFITAYSRLSLNNEALRTFVSMHQNNVRI--VCFTIPPIFKSCASLLAIDVGKQVHSLV 122 Query: 70 IKNGFGCYMYVQSGLIDFYAK 8 I+ GF ++ Q+ LI+FYAK Sbjct: 123 IRYGFHSSVFCQNALINFYAK 143 >ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 434 Score = 141 bits (355), Expect = 6e-32 Identities = 72/143 (50%), Positives = 97/143 (67%) Frame = -3 Query: 430 LINLLQSSLHQNHLKQIHTLIITKHVNLTPLFLKKLLNPPIINYARKVFDHITDPDSFIY 251 LI LL S L N LKQIH+LII KH +L + ++KLLN I+YAR++FD + P +Y Sbjct: 5 LITLLHSPLQINQLKQIHSLIIIKHPSLATVLVRKLLNLSDIDYARQLFDQVPQPGQILY 64 Query: 250 VSMISTYSKLYLNHEAIHTFFSMHGKKVKVGLTCFAFPPVFKSCALLLKSKEGRQVHCVV 71 S+ISTYSKL L+ +A+ TFFSMH + L+CF PPV K+C+ LL G+QVH ++ Sbjct: 65 NSLISTYSKLSLHKDALKTFFSMHHSDTR--LSCFTGPPVIKACSSLLAIDVGKQVHSLI 122 Query: 70 IKNGFGCYMYVQSGLIDFYAKSG 2 + G C +YVQ+ L+DFYAK G Sbjct: 123 VICGIDCNVYVQTSLMDFYAKIG 145 >emb|CBI38781.3| unnamed protein product [Vitis vinifera] Length = 589 Score = 85.1 bits (209), Expect = 5e-15 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 6/135 (4%) Frame = -3 Query: 388 KQIHTLIITKHVNLTPLFLKKLLN------PPIINYARKVFDHITDPDSFIYVSMISTYS 227 KQ H L++ H+ PLF KL++ +NYARK+F + +PD FI +MI Y+ Sbjct: 28 KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87 Query: 226 KLYLNHEAIHTFFSMHGKKVKVGLTCFAFPPVFKSCALLLKSKEGRQVHCVVIKNGFGCY 47 + +EA+ ++ M + V V + +P V +CA L K GR+ HC V+KNGFG Sbjct: 88 RSQNPYEAVSLYYFMVERGVPVDN--YTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSD 145 Query: 46 MYVQSGLIDFYAKSG 2 ++V + LI FY G Sbjct: 146 LFVINALIQFYHNCG 160 >ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] Length = 687 Score = 85.1 bits (209), Expect = 5e-15 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 6/135 (4%) Frame = -3 Query: 388 KQIHTLIITKHVNLTPLFLKKLLN------PPIINYARKVFDHITDPDSFIYVSMISTYS 227 KQ H L++ H+ PLF KL++ +NYARK+F + +PD FI +MI Y+ Sbjct: 28 KQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYA 87 Query: 226 KLYLNHEAIHTFFSMHGKKVKVGLTCFAFPPVFKSCALLLKSKEGRQVHCVVIKNGFGCY 47 + +EA+ ++ M + V V + +P V +CA L K GR+ HC V+KNGFG Sbjct: 88 RSQNPYEAVSLYYFMVERGVPVDN--YTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSD 145 Query: 46 MYVQSGLIDFYAKSG 2 ++V + LI FY G Sbjct: 146 LFVINALIQFYHNCG 160 >emb|CBI27814.3| unnamed protein product [Vitis vinifera] Length = 555 Score = 82.8 bits (203), Expect = 3e-14 Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 7/137 (5%) Frame = -3 Query: 391 LKQIHTLIITKHVNLTPLFLKKLLNP-----PIINYARKVFDHITDPDSFIYVSMISTYS 227 L +IH L++T L KL+ P ++YARK+FD + D F++ ++I Y+ Sbjct: 45 LSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYA 104 Query: 226 KLYLNHEAIHTFFSMHGKKVKVGL--TCFAFPPVFKSCALLLKSKEGRQVHCVVIKNGFG 53 EA+ + +MHG GL + FP V +SCA+L +EG++VHC ++K+GF Sbjct: 105 DAGPCEEALALYSNMHG----AGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFD 160 Query: 52 CYMYVQSGLIDFYAKSG 2 ++VQS L+ Y++SG Sbjct: 161 SDVFVQSSLVAMYSQSG 177