BLASTX nr result
ID: Coptis21_contig00037761
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00037761 (563 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI24961.3| unnamed protein product [Vitis vinifera] 167 8e-40 ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-... 167 8e-40 ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago t... 152 5e-35 ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca... 151 6e-35 ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca... 151 6e-35 >emb|CBI24961.3| unnamed protein product [Vitis vinifera] Length = 319 Score = 167 bits (424), Expect = 8e-40 Identities = 85/152 (55%), Positives = 117/152 (76%), Gaps = 2/152 (1%) Frame = +1 Query: 64 GSMCQMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQTLTE 243 GS+C+MV KI EA L+RRL R PT DEIA+ I + VS++ L+ +R+R PIS+DQ +T Sbjct: 161 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 220 Query: 244 --CMTMQGIIPGPEELRPENMLKKKVIKKEVDRLLMTLDNREALTMRLYFGLNGETTRSC 417 CMT+Q IIPGP+E P+ M+K++++K+EV+R L TL REA +RLYFG+NGET S Sbjct: 221 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 280 Query: 418 EEIGMILNLSRERVRQIHGIALAKLKRTNNID 513 EEIG ++ LSRERVRQI+ IAL+KL++T+ +D Sbjct: 281 EEIGRLMKLSRERVRQINSIALSKLRQTSVVD 312 >ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera] Length = 426 Score = 167 bits (424), Expect = 8e-40 Identities = 85/152 (55%), Positives = 117/152 (76%), Gaps = 2/152 (1%) Frame = +1 Query: 64 GSMCQMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQTLTE 243 GS+C+MV KI EA L+RRL R PT DEIA+ I + VS++ L+ +R+R PIS+DQ +T Sbjct: 268 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 327 Query: 244 --CMTMQGIIPGPEELRPENMLKKKVIKKEVDRLLMTLDNREALTMRLYFGLNGETTRSC 417 CMT+Q IIPGP+E P+ M+K++++K+EV+R L TL REA +RLYFG+NGET S Sbjct: 328 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 387 Query: 418 EEIGMILNLSRERVRQIHGIALAKLKRTNNID 513 EEIG ++ LSRERVRQI+ IAL+KL++T+ +D Sbjct: 388 EEIGRLMKLSRERVRQINSIALSKLRQTSVVD 419 >ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago truncatula] gi|355488477|gb|AES69680.1| RNA polymerase sigma factor rpoD [Medicago truncatula] Length = 185 Score = 152 bits (383), Expect = 5e-35 Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 2/154 (1%) Frame = +1 Query: 64 GSMCQMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQTLTE 243 G MV KI EAN L RRL R PT +EIA+ + + VS++ L+ +R+R PISLD+++T+ Sbjct: 27 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 86 Query: 244 C--MTMQGIIPGPEELRPENMLKKKVIKKEVDRLLMTLDNREALTMRLYFGLNGETTRSC 417 + ++ IIPGP E+ PE M++++++K+ V +LL TLD RE +RLYFGLNGET S Sbjct: 87 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 146 Query: 418 EEIGMILNLSRERVRQIHGIALAKLKRTNNIDNI 519 EEIG +L LSRER+RQIHGIAL+KL++ +D++ Sbjct: 147 EEIGKLLKLSRERIRQIHGIALSKLRQNTIVDSL 180 >ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula] gi|355488489|gb|AES69692.1| RNA polymerase sigma factor [Medicago truncatula] Length = 267 Score = 151 bits (382), Expect = 6e-35 Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 2/154 (1%) Frame = +1 Query: 64 GSMCQMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQTLTE 243 G MV KI EAN L RRL R PT +EIA+ + + VS++ L+ +R+R PISLD+++T+ Sbjct: 109 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 168 Query: 244 C--MTMQGIIPGPEELRPENMLKKKVIKKEVDRLLMTLDNREALTMRLYFGLNGETTRSC 417 + ++ IIPGP E+ PE M++++++K+ V +LL TLD RE +RLYFGLNGET S Sbjct: 169 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 228 Query: 418 EEIGMILNLSRERVRQIHGIALAKLKRTNNIDNI 519 EEIG +L LSRER+RQIHGIAL+KL++ +D++ Sbjct: 229 EEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSL 262 >ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula] gi|355488487|gb|AES69690.1| RNA polymerase sigma factor [Medicago truncatula] Length = 403 Score = 151 bits (382), Expect = 6e-35 Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 2/154 (1%) Frame = +1 Query: 64 GSMCQMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQTLTE 243 G MV KI EAN L RRL R PT +EIA+ + + VS++ L+ +R+R PISLD+++T+ Sbjct: 245 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 304 Query: 244 C--MTMQGIIPGPEELRPENMLKKKVIKKEVDRLLMTLDNREALTMRLYFGLNGETTRSC 417 + ++ IIPGP E+ PE M++++++K+ V +LL TLD RE +RLYFGLNGET S Sbjct: 305 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 364 Query: 418 EEIGMILNLSRERVRQIHGIALAKLKRTNNIDNI 519 EEIG +L LSRER+RQIHGIAL+KL++ +D++ Sbjct: 365 EEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSL 398