BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037761
         (563 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24961.3| unnamed protein product [Vitis vinifera]              167   8e-40
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   167   8e-40
ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago t...   152   5e-35
ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca...   151   6e-35
ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca...   151   6e-35

>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  167 bits (424), Expect = 8e-40
 Identities = 85/152 (55%), Positives = 117/152 (76%), Gaps = 2/152 (1%)
 Frame = +1

Query: 64  GSMCQMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQTLTE 243
           GS+C+MV KI EA   L+RRL R PT DEIA+ I + VS++ L+ +R+R PIS+DQ +T 
Sbjct: 161 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 220

Query: 244 --CMTMQGIIPGPEELRPENMLKKKVIKKEVDRLLMTLDNREALTMRLYFGLNGETTRSC 417
             CMT+Q IIPGP+E  P+ M+K++++K+EV+R L TL  REA  +RLYFG+NGET  S 
Sbjct: 221 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 280

Query: 418 EEIGMILNLSRERVRQIHGIALAKLKRTNNID 513
           EEIG ++ LSRERVRQI+ IAL+KL++T+ +D
Sbjct: 281 EEIGRLMKLSRERVRQINSIALSKLRQTSVVD 312


>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  167 bits (424), Expect = 8e-40
 Identities = 85/152 (55%), Positives = 117/152 (76%), Gaps = 2/152 (1%)
 Frame = +1

Query: 64  GSMCQMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQTLTE 243
           GS+C+MV KI EA   L+RRL R PT DEIA+ I + VS++ L+ +R+R PIS+DQ +T 
Sbjct: 268 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 327

Query: 244 --CMTMQGIIPGPEELRPENMLKKKVIKKEVDRLLMTLDNREALTMRLYFGLNGETTRSC 417
             CMT+Q IIPGP+E  P+ M+K++++K+EV+R L TL  REA  +RLYFG+NGET  S 
Sbjct: 328 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 387

Query: 418 EEIGMILNLSRERVRQIHGIALAKLKRTNNID 513
           EEIG ++ LSRERVRQI+ IAL+KL++T+ +D
Sbjct: 388 EEIGRLMKLSRERVRQINSIALSKLRQTSVVD 419


>ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
           gi|355488477|gb|AES69680.1| RNA polymerase sigma factor
           rpoD [Medicago truncatula]
          Length = 185

 Score =  152 bits (383), Expect = 5e-35
 Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 2/154 (1%)
 Frame = +1

Query: 64  GSMCQMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQTLTE 243
           G    MV KI EAN  L RRL R PT +EIA+ + + VS++ L+ +R+R PISLD+++T+
Sbjct: 27  GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 86

Query: 244 C--MTMQGIIPGPEELRPENMLKKKVIKKEVDRLLMTLDNREALTMRLYFGLNGETTRSC 417
              + ++ IIPGP E+ PE M++++++K+ V +LL TLD RE   +RLYFGLNGET  S 
Sbjct: 87  QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 146

Query: 418 EEIGMILNLSRERVRQIHGIALAKLKRTNNIDNI 519
           EEIG +L LSRER+RQIHGIAL+KL++   +D++
Sbjct: 147 EEIGKLLKLSRERIRQIHGIALSKLRQNTIVDSL 180


>ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488489|gb|AES69692.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 267

 Score =  151 bits (382), Expect = 6e-35
 Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 2/154 (1%)
 Frame = +1

Query: 64  GSMCQMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQTLTE 243
           G    MV KI EAN  L RRL R PT +EIA+ + + VS++ L+ +R+R PISLD+++T+
Sbjct: 109 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 168

Query: 244 C--MTMQGIIPGPEELRPENMLKKKVIKKEVDRLLMTLDNREALTMRLYFGLNGETTRSC 417
              + ++ IIPGP E+ PE M++++++K+ V +LL TLD RE   +RLYFGLNGET  S 
Sbjct: 169 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 228

Query: 418 EEIGMILNLSRERVRQIHGIALAKLKRTNNIDNI 519
           EEIG +L LSRER+RQIHGIAL+KL++   +D++
Sbjct: 229 EEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSL 262


>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 403

 Score =  151 bits (382), Expect = 6e-35
 Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 2/154 (1%)
 Frame = +1

Query: 64  GSMCQMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQTLTE 243
           G    MV KI EAN  L RRL R PT +EIA+ + + VS++ L+ +R+R PISLD+++T+
Sbjct: 245 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 304

Query: 244 C--MTMQGIIPGPEELRPENMLKKKVIKKEVDRLLMTLDNREALTMRLYFGLNGETTRSC 417
              + ++ IIPGP E+ PE M++++++K+ V +LL TLD RE   +RLYFGLNGET  S 
Sbjct: 305 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 364

Query: 418 EEIGMILNLSRERVRQIHGIALAKLKRTNNIDNI 519
           EEIG +L LSRER+RQIHGIAL+KL++   +D++
Sbjct: 365 EEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSL 398