BLASTX nr result
ID: Coptis21_contig00037731
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00037731 (416 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containi... 162 2e-38 ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containi... 150 8e-35 ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containi... 150 8e-35 ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|2... 147 9e-34 ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containi... 146 1e-33 >ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Vitis vinifera] Length = 492 Score = 162 bits (411), Expect = 2e-38 Identities = 84/146 (57%), Positives = 105/146 (71%), Gaps = 9/146 (6%) Frame = +3 Query: 3 RWNYIKTLV-NGFTSKQVSEITLGIKNNPRLALRFFHWSHKNSLCKHDLVSYSTIIHILA 179 RW+++++L GFT + S+I L IKNNP LAL FF W H SLC H L+SYSTIIHILA Sbjct: 52 RWSHLQSLFPKGFTPTEASQIVLQIKNNPHLALSFFLWCHHKSLCNHTLLSYSTIIHILA 111 Query: 180 RARLKTSSQTLMRAAIRVYD--------PLEVFETLVKSYRYCDSAPFVFDLLVKVCLLG 335 RARLK+ + L+R AIRV+D P ++FE+LVK+Y C SAPFVFDLL+K CL Sbjct: 112 RARLKSQALGLIRTAIRVFDDSDECSSQPPKIFESLVKTYNSCGSAPFVFDLLIKACLNS 171 Query: 336 NKIDCAIQIVRMLRSRGICMNISTCN 413 +I+ +I IV+MLRSRGI ISTCN Sbjct: 172 KRIEQSISIVKMLRSRGISPTISTCN 197 >ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Cucumis sativus] Length = 499 Score = 150 bits (380), Expect = 8e-35 Identities = 79/155 (50%), Positives = 103/155 (66%), Gaps = 18/155 (11%) Frame = +3 Query: 3 RWNYIKTLV-NGFTSKQVSEITLGIKNNPRLALRFFHWSHKNSLCKHDLVSYSTIIHILA 179 RW ++ +L NGF + S+I L IKNNP LALRFF W+ SLC H+L+SYST+IHILA Sbjct: 58 RWRFLNSLCPNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLCNHNLISYSTLIHILA 117 Query: 180 RARLKTSSQTLMRAAIRVYD-----------------PLEVFETLVKSYRYCDSAPFVFD 308 R RL+T ++ +++ AIR PL++FETLVK+Y+ C SAPFVFD Sbjct: 118 RGRLRTHAKDVIQTAIRAAQLEDSDNYSKTERFSPSRPLKLFETLVKTYKRCGSAPFVFD 177 Query: 309 LLVKVCLLGNKIDCAIQIVRMLRSRGICMNISTCN 413 LL+K L K+D +I+IVRMLRSRGI +ST N Sbjct: 178 LLIKALLDSKKLDSSIEIVRMLRSRGISPQVSTLN 212 >ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Cucumis sativus] gi|449472579|ref|XP_004153637.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Cucumis sativus] Length = 499 Score = 150 bits (380), Expect = 8e-35 Identities = 79/155 (50%), Positives = 103/155 (66%), Gaps = 18/155 (11%) Frame = +3 Query: 3 RWNYIKTLV-NGFTSKQVSEITLGIKNNPRLALRFFHWSHKNSLCKHDLVSYSTIIHILA 179 RW ++ +L NGF + S+I L IKNNP LALRFF W+ SLC H+L+SYST+IHILA Sbjct: 58 RWRFLNSLCPNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLCNHNLISYSTLIHILA 117 Query: 180 RARLKTSSQTLMRAAIRVYD-----------------PLEVFETLVKSYRYCDSAPFVFD 308 R RL+T ++ +++ AIR PL++FETLVK+Y+ C SAPFVFD Sbjct: 118 RGRLRTHAKDVIQTAIRAAQLEDSDNYSKTERFSPSRPLKLFETLVKTYKRCGSAPFVFD 177 Query: 309 LLVKVCLLGNKIDCAIQIVRMLRSRGICMNISTCN 413 LL+K L K+D +I+IVRMLRSRGI +ST N Sbjct: 178 LLIKALLDSKKLDSSIEIVRMLRSRGISPQVSTLN 212 >ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|222849039|gb|EEE86586.1| predicted protein [Populus trichocarpa] Length = 498 Score = 147 bits (371), Expect = 9e-34 Identities = 80/149 (53%), Positives = 107/149 (71%), Gaps = 12/149 (8%) Frame = +3 Query: 3 RWNYIKTLVNGFTSKQV-----SEITLGIKNNPRLALRFFHWS-HKNSLCKHDLVSYSTI 164 RW+++++L+ TS + S ITL +K+NP LAL FFH++ H +SLC H+L SY+TI Sbjct: 55 RWSHLRSLLTTTTSTPLAPGHFSLITLKLKSNPHLALSFFHFTLHNSSLCSHNLRSYATI 114 Query: 165 IHILARARLKTSSQTLMRAAIR------VYDPLEVFETLVKSYRYCDSAPFVFDLLVKVC 326 IHIL+RARLK +Q ++RA +R + + FE LVKSYR CDSAPFVFDLL+K C Sbjct: 115 IHILSRARLKAHAQEIIRAGLRSQILYHLLKEVRFFEVLVKSYRECDSAPFVFDLLIKSC 174 Query: 327 LLGNKIDCAIQIVRMLRSRGICMNISTCN 413 L KID +I+IV+MLRS+GI +ISTCN Sbjct: 175 LELKKIDGSIEIVKMLRSKGISPSISTCN 203 >ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Glycine max] Length = 487 Score = 146 bits (369), Expect = 1e-33 Identities = 80/150 (53%), Positives = 100/150 (66%), Gaps = 13/150 (8%) Frame = +3 Query: 3 RWNYIKTLV-NGFTSKQVSEITLGIKNNPRLALRFFHWSHKNSLCKHDLVSYSTIIHILA 179 RW+ +++ NG T + SEITL IKN P+LALRFF W+ SLC H+L SYS+IIH+LA Sbjct: 50 RWSNLRSACPNGITPAEFSEITLHIKNKPQLALRFFLWTKSKSLCNHNLASYSSIIHLLA 109 Query: 180 RARLKTSSQTLMRAAIRVYD------------PLEVFETLVKSYRYCDSAPFVFDLLVKV 323 RARL + + L+R AIR PL +FETLVK+YR SAPFVFDLL+K Sbjct: 110 RARLSSHAYDLIRTAIRASHQNDEENCRFNSRPLNLFETLVKTYRDSGSAPFVFDLLIKA 169 Query: 324 CLLGNKIDCAIQIVRMLRSRGICMNISTCN 413 CL K+D +I+IVRML SRGI +ST N Sbjct: 170 CLDSKKLDPSIEIVRMLLSRGISPKVSTLN 199