BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037731
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containi...   162   2e-38
ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containi...   150   8e-35
ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containi...   150   8e-35
ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|2...   147   9e-34
ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containi...   146   1e-33

>ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Vitis vinifera]
          Length = 492

 Score =  162 bits (411), Expect = 2e-38
 Identities = 84/146 (57%), Positives = 105/146 (71%), Gaps = 9/146 (6%)
 Frame = +3

Query: 3   RWNYIKTLV-NGFTSKQVSEITLGIKNNPRLALRFFHWSHKNSLCKHDLVSYSTIIHILA 179
           RW+++++L   GFT  + S+I L IKNNP LAL FF W H  SLC H L+SYSTIIHILA
Sbjct: 52  RWSHLQSLFPKGFTPTEASQIVLQIKNNPHLALSFFLWCHHKSLCNHTLLSYSTIIHILA 111

Query: 180 RARLKTSSQTLMRAAIRVYD--------PLEVFETLVKSYRYCDSAPFVFDLLVKVCLLG 335
           RARLK+ +  L+R AIRV+D        P ++FE+LVK+Y  C SAPFVFDLL+K CL  
Sbjct: 112 RARLKSQALGLIRTAIRVFDDSDECSSQPPKIFESLVKTYNSCGSAPFVFDLLIKACLNS 171

Query: 336 NKIDCAIQIVRMLRSRGICMNISTCN 413
            +I+ +I IV+MLRSRGI   ISTCN
Sbjct: 172 KRIEQSISIVKMLRSRGISPTISTCN 197


>ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
          Length = 499

 Score =  150 bits (380), Expect = 8e-35
 Identities = 79/155 (50%), Positives = 103/155 (66%), Gaps = 18/155 (11%)
 Frame = +3

Query: 3   RWNYIKTLV-NGFTSKQVSEITLGIKNNPRLALRFFHWSHKNSLCKHDLVSYSTIIHILA 179
           RW ++ +L  NGF   + S+I L IKNNP LALRFF W+   SLC H+L+SYST+IHILA
Sbjct: 58  RWRFLNSLCPNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLCNHNLISYSTLIHILA 117

Query: 180 RARLKTSSQTLMRAAIRVYD-----------------PLEVFETLVKSYRYCDSAPFVFD 308
           R RL+T ++ +++ AIR                    PL++FETLVK+Y+ C SAPFVFD
Sbjct: 118 RGRLRTHAKDVIQTAIRAAQLEDSDNYSKTERFSPSRPLKLFETLVKTYKRCGSAPFVFD 177

Query: 309 LLVKVCLLGNKIDCAIQIVRMLRSRGICMNISTCN 413
           LL+K  L   K+D +I+IVRMLRSRGI   +ST N
Sbjct: 178 LLIKALLDSKKLDSSIEIVRMLRSRGISPQVSTLN 212


>ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
           gi|449472579|ref|XP_004153637.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g15980-like [Cucumis sativus]
          Length = 499

 Score =  150 bits (380), Expect = 8e-35
 Identities = 79/155 (50%), Positives = 103/155 (66%), Gaps = 18/155 (11%)
 Frame = +3

Query: 3   RWNYIKTLV-NGFTSKQVSEITLGIKNNPRLALRFFHWSHKNSLCKHDLVSYSTIIHILA 179
           RW ++ +L  NGF   + S+I L IKNNP LALRFF W+   SLC H+L+SYST+IHILA
Sbjct: 58  RWRFLNSLCPNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLCNHNLISYSTLIHILA 117

Query: 180 RARLKTSSQTLMRAAIRVYD-----------------PLEVFETLVKSYRYCDSAPFVFD 308
           R RL+T ++ +++ AIR                    PL++FETLVK+Y+ C SAPFVFD
Sbjct: 118 RGRLRTHAKDVIQTAIRAAQLEDSDNYSKTERFSPSRPLKLFETLVKTYKRCGSAPFVFD 177

Query: 309 LLVKVCLLGNKIDCAIQIVRMLRSRGICMNISTCN 413
           LL+K  L   K+D +I+IVRMLRSRGI   +ST N
Sbjct: 178 LLIKALLDSKKLDSSIEIVRMLRSRGISPQVSTLN 212


>ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|222849039|gb|EEE86586.1|
           predicted protein [Populus trichocarpa]
          Length = 498

 Score =  147 bits (371), Expect = 9e-34
 Identities = 80/149 (53%), Positives = 107/149 (71%), Gaps = 12/149 (8%)
 Frame = +3

Query: 3   RWNYIKTLVNGFTSKQV-----SEITLGIKNNPRLALRFFHWS-HKNSLCKHDLVSYSTI 164
           RW+++++L+   TS  +     S ITL +K+NP LAL FFH++ H +SLC H+L SY+TI
Sbjct: 55  RWSHLRSLLTTTTSTPLAPGHFSLITLKLKSNPHLALSFFHFTLHNSSLCSHNLRSYATI 114

Query: 165 IHILARARLKTSSQTLMRAAIR------VYDPLEVFETLVKSYRYCDSAPFVFDLLVKVC 326
           IHIL+RARLK  +Q ++RA +R      +   +  FE LVKSYR CDSAPFVFDLL+K C
Sbjct: 115 IHILSRARLKAHAQEIIRAGLRSQILYHLLKEVRFFEVLVKSYRECDSAPFVFDLLIKSC 174

Query: 327 LLGNKIDCAIQIVRMLRSRGICMNISTCN 413
           L   KID +I+IV+MLRS+GI  +ISTCN
Sbjct: 175 LELKKIDGSIEIVKMLRSKGISPSISTCN 203


>ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g15980-like [Glycine max]
          Length = 487

 Score =  146 bits (369), Expect = 1e-33
 Identities = 80/150 (53%), Positives = 100/150 (66%), Gaps = 13/150 (8%)
 Frame = +3

Query: 3   RWNYIKTLV-NGFTSKQVSEITLGIKNNPRLALRFFHWSHKNSLCKHDLVSYSTIIHILA 179
           RW+ +++   NG T  + SEITL IKN P+LALRFF W+   SLC H+L SYS+IIH+LA
Sbjct: 50  RWSNLRSACPNGITPAEFSEITLHIKNKPQLALRFFLWTKSKSLCNHNLASYSSIIHLLA 109

Query: 180 RARLKTSSQTLMRAAIRVYD------------PLEVFETLVKSYRYCDSAPFVFDLLVKV 323
           RARL + +  L+R AIR               PL +FETLVK+YR   SAPFVFDLL+K 
Sbjct: 110 RARLSSHAYDLIRTAIRASHQNDEENCRFNSRPLNLFETLVKTYRDSGSAPFVFDLLIKA 169

Query: 324 CLLGNKIDCAIQIVRMLRSRGICMNISTCN 413
           CL   K+D +I+IVRML SRGI   +ST N
Sbjct: 170 CLDSKKLDPSIEIVRMLLSRGISPKVSTLN 199