BLASTX nr result

ID: Coptis21_contig00037691 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037691
         (328 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303396.1| predicted protein [Populus trichocarpa] gi|2...   122   3e-26
ref|XP_002520397.1| conserved hypothetical protein [Ricinus comm...   121   5e-26
ref|XP_002975258.1| hypothetical protein SELMODRAFT_451567 [Sela...    97   1e-18
ref|XP_002987435.1| hypothetical protein SELMODRAFT_451566 [Sela...    97   1e-18
ref|XP_642006.1| DNA helicase [Dictyostelium discoideum AX4] gi|...    90   2e-16

>ref|XP_002303396.1| predicted protein [Populus trichocarpa] gi|222840828|gb|EEE78375.1|
           predicted protein [Populus trichocarpa]
          Length = 493

 Score =  122 bits (306), Expect = 3e-26
 Identities = 61/106 (57%), Positives = 78/106 (73%), Gaps = 2/106 (1%)
 Frame = +2

Query: 14  WGGIQLIVSGDFFQLPPIVEDPL--GREFAFEANCWNASFDLQVELTQVFRQSEREFIDL 187
           WGGIQLIV GDFFQLPP+++     G+EFAFEA+CWNASFDLQVELTQVFRQS+   I +
Sbjct: 186 WGGIQLIVCGDFFQLPPVIKQQKLSGKEFAFEADCWNASFDLQVELTQVFRQSDPRLIKM 245

Query: 188 LQGVRRGRKDEEHLRILQHCCNEPVDSSVTVPRLYPLNMHVQRVND 325
           LQG+R+G  D E L++L+  C+     S+ V  LYP    V++VN+
Sbjct: 246 LQGIRKGETDAEDLQLLEESCSMNKQDSLVV-WLYPRINDVEKVNE 290


>ref|XP_002520397.1| conserved hypothetical protein [Ricinus communis]
           gi|223540444|gb|EEF42013.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 512

 Score =  121 bits (304), Expect = 5e-26
 Identities = 62/108 (57%), Positives = 82/108 (75%), Gaps = 4/108 (3%)
 Frame = +2

Query: 14  WGGIQLIVSGDFFQLPPIVE--DPLGREFAFEANCWNASFDLQVELTQVFRQSEREFIDL 187
           WGGIQLIVSGDFFQLP +++  +P G+EFAFEA+CWN SF  QVE+T+VFRQ++ + I+L
Sbjct: 171 WGGIQLIVSGDFFQLPLVLKKSNPSGKEFAFEADCWNRSFHAQVEITKVFRQTDPQLINL 230

Query: 188 LQGVRRGRKDEEHLRILQHCC--NEPVDSSVTVPRLYPLNMHVQRVND 325
           LQG+R+G  D E L++L+ CC  NEP  S+V   RLYP    V +VN+
Sbjct: 231 LQGIRKGVIDTEDLKLLEQCCSNNEPDPSAV---RLYPRIEDVNKVNE 275


>ref|XP_002975258.1| hypothetical protein SELMODRAFT_451567 [Selaginella moellendorffii]
           gi|300156832|gb|EFJ23459.1| hypothetical protein
           SELMODRAFT_451567 [Selaginella moellendorffii]
          Length = 580

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 48/104 (46%), Positives = 63/104 (60%)
 Frame = +2

Query: 14  WGGIQLIVSGDFFQLPPIVEDPLGREFAFEANCWNASFDLQVELTQVFRQSEREFIDLLQ 193
           +GG+QLIV+GDFFQLPP+ +    + F F A CW   FDLQ+ELTQVFRQS+REF+ +L 
Sbjct: 287 FGGLQLIVTGDFFQLPPVQKPGETKSFVFSAKCWKECFDLQMELTQVFRQSDREFVGMLN 346

Query: 194 GVRRGRKDEEHLRILQHCCNEPVDSSVTVPRLYPLNMHVQRVND 325
            +RRG         L+ C +      +   RLYP    V R N+
Sbjct: 347 EIRRGECSFATETRLKSCTSISTAPGIEPTRLYPRRADVDRENE 390


>ref|XP_002987435.1| hypothetical protein SELMODRAFT_451566 [Selaginella moellendorffii]
           gi|300144841|gb|EFJ11522.1| hypothetical protein
           SELMODRAFT_451566 [Selaginella moellendorffii]
          Length = 580

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 48/104 (46%), Positives = 63/104 (60%)
 Frame = +2

Query: 14  WGGIQLIVSGDFFQLPPIVEDPLGREFAFEANCWNASFDLQVELTQVFRQSEREFIDLLQ 193
           +GG+QLIV+GDFFQLPP+ +    + F F A CW   FDLQ+ELTQVFRQS+REF+ +L 
Sbjct: 287 FGGLQLIVTGDFFQLPPVQKPGETKSFVFNAKCWKECFDLQMELTQVFRQSDREFVGMLN 346

Query: 194 GVRRGRKDEEHLRILQHCCNEPVDSSVTVPRLYPLNMHVQRVND 325
            +RRG         L+ C +      +   RLYP    V R N+
Sbjct: 347 EIRRGECSFATETRLKSCTSISTAPGIEPTRLYPRRADVDRENE 390


>ref|XP_642006.1| DNA helicase [Dictyostelium discoideum AX4]
           gi|60470155|gb|EAL68135.1| DNA helicase [Dictyostelium
           discoideum AX4]
          Length = 669

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = +2

Query: 5   DKPWGGIQLIVSGDFFQLPPIVEDPLGREFAFEANCWNASFDLQVELTQVFRQSEREFID 184
           ++P+GGIQL++ GDFFQLPP+  +     +AFE   W  S D+ VELT V RQ E EFID
Sbjct: 369 NQPFGGIQLVLVGDFFQLPPVHGN-----YAFECKAWKKSIDISVELTTVMRQKETEFID 423

Query: 185 LLQGVRRGRKDEEHLRILQHCCNEPVDSS--VTVPRLYPLNMHVQRVNDA 328
           +L  +R G   E+ +  L   CN+P+D S  +   RLY  N  V + N +
Sbjct: 424 ILNKIRVGDIKEDMINRLVSTCNKPLDISNGILPTRLYSTNASVDQENQS 473


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