BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037676
         (382 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containi...   154   9e-36
emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]   153   1e-35
ref|XP_003592711.1| Pentatricopeptide repeat-containing protein ...   147   9e-34
ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containi...   144   6e-33
ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protei...   143   1e-32

>ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Vitis vinifera]
          Length = 539

 Score =  154 bits (388), Expect = 9e-36
 Identities = 74/126 (58%), Positives = 95/126 (75%)
 Frame = -2

Query: 381 SKVLYFSAMSNAGNIDYSYRFFTHLSNPNIFSWNLMIRGFSKSKNPSRSILLFNKMSRIG 202
           S++L FSA+S+ G+ID+SYR F  + +P I +WN +IRGFSK KNP+ S+ +F KM R G
Sbjct: 48  SRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFG 107

Query: 201 VVADHMTFPFLAKACAHLSCLRLGLALHCYISKSGFEFDLFVRNSLIHMYASCGDIVSGK 22
           V  DH+T+PF+AKA A LS LRL LA+HC I+K G  FD F+ NSLIHMY SCGDI S +
Sbjct: 108 VCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSAR 167

Query: 21  ILFDEM 4
            +FDEM
Sbjct: 168 KVFDEM 173



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 36/118 (30%), Positives = 61/118 (51%)
 Frame = -2

Query: 354 SNAGNIDYSYRFFTHLSNPNIFSWNLMIRGFSKSKNPSRSILLFNKMSRIGVVADHMTFP 175
           +  G++D + + F  + + ++ SW+ MI G  K      ++ +F +M  +G  A+ +T  
Sbjct: 189 AKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVTMV 248

Query: 174 FLAKACAHLSCLRLGLALHCYISKSGFEFDLFVRNSLIHMYASCGDIVSGKILFDEMP 1
            +  ACAHL  L  G  +H Y+  +   F L +R SL+ MYA CG I     +F  +P
Sbjct: 249 SVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVP 306


>emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
          Length = 532

 Score =  153 bits (387), Expect = 1e-35
 Identities = 74/126 (58%), Positives = 95/126 (75%)
 Frame = -2

Query: 381 SKVLYFSAMSNAGNIDYSYRFFTHLSNPNIFSWNLMIRGFSKSKNPSRSILLFNKMSRIG 202
           S++L FSA+S+ G+ID+SYR F  + +P I +WN +IRGFSK KNP+ S+ +F KM R G
Sbjct: 41  SRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFG 100

Query: 201 VVADHMTFPFLAKACAHLSCLRLGLALHCYISKSGFEFDLFVRNSLIHMYASCGDIVSGK 22
           V  DH+T+PF+AKA A LS LRL LA+HC I+K G  FD F+ NSLIHMY SCGDI S +
Sbjct: 101 VCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSAR 160

Query: 21  ILFDEM 4
            +FDEM
Sbjct: 161 KVFDEM 166



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 36/118 (30%), Positives = 62/118 (52%)
 Frame = -2

Query: 354 SNAGNIDYSYRFFTHLSNPNIFSWNLMIRGFSKSKNPSRSILLFNKMSRIGVVADHMTFP 175
           +  G++D +++ F  + + ++ SW+ MI G  K      ++ +F +M  +G  A+ +T  
Sbjct: 182 AKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVTMV 241

Query: 174 FLAKACAHLSCLRLGLALHCYISKSGFEFDLFVRNSLIHMYASCGDIVSGKILFDEMP 1
            +  ACAHL  L  G  +H Y+  +   F L +R SL+ MYA CG I     +F  +P
Sbjct: 242 SVLCACAHLGALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVP 299


>ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355481759|gb|AES62962.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  147 bits (371), Expect = 9e-34
 Identities = 69/125 (55%), Positives = 95/125 (76%)
 Frame = -2

Query: 378 KVLYFSAMSNAGNIDYSYRFFTHLSNPNIFSWNLMIRGFSKSKNPSRSILLFNKMSRIGV 199
           K+L FSA+SN+G+IDYSYR F+ +S+P IFSWN++IRG+S SKNP  S+ +F KM R GV
Sbjct: 51  KILSFSALSNSGDIDYSYRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGV 110

Query: 198 VADHMTFPFLAKACAHLSCLRLGLALHCYISKSGFEFDLFVRNSLIHMYASCGDIVSGKI 19
             D++T+PFL KA A LS  + G+++H  I K+G E D F++NSLIHMYASCG+I+    
Sbjct: 111 APDYLTYPFLVKASARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHK 170

Query: 18  LFDEM 4
           +F+ M
Sbjct: 171 VFESM 175



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 32/114 (28%), Positives = 57/114 (50%)
 Frame = -2

Query: 354 SNAGNIDYSYRFFTHLSNPNIFSWNLMIRGFSKSKNPSRSILLFNKMSRIGVVADHMTFP 175
           +  G +  + + F  +   ++ SW+  I G+ K+     ++ +F KM  +G  A+ +T  
Sbjct: 191 AKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMV 250

Query: 174 FLAKACAHLSCLRLGLALHCYISKSGFEFDLFVRNSLIHMYASCGDIVSGKILF 13
            +  ACAHL  L+ G  +H YI  +     + ++ SL+ MYA CG I     +F
Sbjct: 251 SVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVF 304


>ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Glycine max]
          Length = 548

 Score =  144 bits (364), Expect = 6e-33
 Identities = 67/126 (53%), Positives = 96/126 (76%)
 Frame = -2

Query: 381 SKVLYFSAMSNAGNIDYSYRFFTHLSNPNIFSWNLMIRGFSKSKNPSRSILLFNKMSRIG 202
           SK+L FSA+SN+G+I+YSYR F+ LS+P IFSWN +IRG+S SKNP +S+ +F KM R+G
Sbjct: 50  SKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLG 109

Query: 201 VVADHMTFPFLAKACAHLSCLRLGLALHCYISKSGFEFDLFVRNSLIHMYASCGDIVSGK 22
           V  D++T+PFL KA A L     G+++H +I K+G E D F++NSLIHMYA+CG+ +  +
Sbjct: 110 VAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQ 169

Query: 21  ILFDEM 4
            +FD +
Sbjct: 170 KVFDSI 175



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 34/114 (29%), Positives = 61/114 (53%)
 Frame = -2

Query: 354 SNAGNIDYSYRFFTHLSNPNIFSWNLMIRGFSKSKNPSRSILLFNKMSRIGVVADHMTFP 175
           +  G +  + + F  +S  ++ SW+ +I G+ K+   S ++ +F KM   G  A+ +T  
Sbjct: 191 AKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMV 250

Query: 174 FLAKACAHLSCLRLGLALHCYISKSGFEFDLFVRNSLIHMYASCGDIVSGKILF 13
            ++ ACAH+  L  G  ++ YI  +G    L ++ SL+ MYA CG I    ++F
Sbjct: 251 SVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIF 304


>ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
           thaliana] gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g08305 gi|332003897|gb|AED91280.1| pentatricopeptide
           repeat (PPR) family protein [Arabidopsis thaliana]
          Length = 534

 Score =  143 bits (361), Expect = 1e-32
 Identities = 66/127 (51%), Positives = 95/127 (74%)
 Frame = -2

Query: 381 SKVLYFSAMSNAGNIDYSYRFFTHLSNPNIFSWNLMIRGFSKSKNPSRSILLFNKMSRIG 202
           S+ L FSA+S++G++DY+Y+F + LS+P  + WN +IRGFS S+NP +SI ++ +M R G
Sbjct: 44  SQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFG 103

Query: 201 VVADHMTFPFLAKACAHLSCLRLGLALHCYISKSGFEFDLFVRNSLIHMYASCGDIVSGK 22
           ++ DHMT+PFL K+ + LS  +LG +LHC + KSG E+DLF+ N+LIHMY S  D  S +
Sbjct: 104 LLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASAR 163

Query: 21  ILFDEMP 1
            LFDEMP
Sbjct: 164 KLFDEMP 170



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
 Frame = -2

Query: 360 AMSNAGNIDYSYRFFTHLSNPNIFSWNLMIRGFSKSKNPSRSILLFNKMSRIGVV-ADHM 184
           A + +G++  +   F  +S  ++ +W+ MI G+ K    ++++ +F++M R+G   A+ +
Sbjct: 183 AYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEV 242

Query: 183 TFPFLAKACAHLSCLRLGLALHCYISKSGFEFDLFVRNSLIHMYASCGDI 34
           T   +  ACAHL  L  G  +H YI        + ++ SLI MYA CG I
Sbjct: 243 TMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSI 292