BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037589
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN07997.1| contains similarity to reverse trancriptase , rel...    71   8e-11
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    68   9e-10
gb|EAZ37852.1| hypothetical protein OsJ_22198 [Oryza sativa Japo...    66   3e-09
gb|ABA96203.1| retrotransposon protein, putative, unclassified, ...    65   4e-09
gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japo...    65   4e-09

>gb|ABN07997.1| contains similarity to reverse trancriptase , related [Medicago
           truncatula]
          Length = 407

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
 Frame = +3

Query: 6   GVFTVKSAYNWFYNQLPKFVVSFSLSFVKN-VRNLI*KLHAPYRIKLFVWKVMKGILPTK 182
           G+++VKS YN       + + + S S  +  +   I  LH   R K+ +W+++   LP +
Sbjct: 291 GIYSVKSGYNTLRTWQTQQINNTSTSSDETLIWKKIWSLHTIPRHKVLLWRILNDSLPVR 350

Query: 183 KVLFDRHNCDSDVCPRCLSKHETIEHVLFSCSCLERIWFASPLALNFSNWPRNFNIN 353
             L  R      +CPRC SK ETI H+  SC   +R+WF S L +NF N P    IN
Sbjct: 351 SSLRKRGIQCYPLCPRCHSKTETITHLFMSCPLSKRVWFGSNLCINFDNLPNPNFIN 407


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
 Frame = +3

Query: 3    NGVFTVKSAYNWFYNQL--PKFVVSFSLSFVKNVRNLI*KLHAPYRIKLFVWKVMKGILP 176
            +G +TVKS Y W    L  P   + F    V  ++  + K+    + K F W+ + G L 
Sbjct: 890  SGNYTVKSGY-WAARDLSRPTCDLPFQGPSVSALQAQVWKIKTTRKFKHFEWQCLSGCLA 948

Query: 177  TKKVLFDRHNCDSDVCPRCLSKHETIEHVLFSCSCLERIWFASPLALNFSNWPRN 341
            T + LF RH     VCPRC ++ E+I H+LF C    +IW  SP+  +   +PRN
Sbjct: 949  TNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRN 1003


>gb|EAZ37852.1| hypothetical protein OsJ_22198 [Oryza sativa Japonica Group]
          Length = 446

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
 Frame = +3

Query: 3   NGVFTVKSAYNWFYN-------QLPKFVVSFSLSFVKNVRNLI*KLHAPYRIKLFVWKVM 161
           +G+F+V+SAY+  +N       +LP    S S     N+     KL +P +IK+F W+++
Sbjct: 214 SGIFSVRSAYHCQWNAKFGSKERLPDSASSSSRPVWDNMW----KLESPPKIKIFAWRML 269

Query: 162 KGILPTKKVLFDRHNCDSDVCPRCLSKHETIEHVLFSCSCLERIW 296
            G++P K +L D+H      CP C S  E I+H++F+C   + IW
Sbjct: 270 HGVIPCKGILADKHIAVQGGCPVCPSGVEDIKHMVFTCKRAKLIW 314


>gb|ABA96203.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 1378

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
 Frame = +3

Query: 3   NGVFTVKSAYN--WFYNQLPKFV-VSFSLSFVKNVRNLI*KLHAPYRIKLFVWKVMKGIL 173
           +G F+VKSAY+  W Y    +   +  S +    +   +  L  P +IK+F W+ +KG++
Sbjct: 472 SGTFSVKSAYHCQWDYKFGERSAQMQASTASRSRLWKRLWNLKVPAKIKIFGWRALKGLV 531

Query: 174 PTKKVLFDRHNCDSDVCPRCLSKHETIEHVLFSCSCLERIW 296
           P + +L +RH  DS  CP C +  E I+H++F+C+  +++W
Sbjct: 532 PCRAILANRHVGDSGGCPVCQNGPEDIKHMIFTCARAKQVW 572


>gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japonica Group]
          Length = 1395

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
 Frame = +3

Query: 3   NGVFTVKSAYN--WFYNQLPKFV-VSFSLSFVKNVRNLI*KLHAPYRIKLFVWKVMKGIL 173
           +G F+VKSAY+  W Y    +   +  S +    +   +  L  P +IK+F W+ +KG++
Sbjct: 502 SGTFSVKSAYHCQWDYKFGERSAQMQASTASRSRLWKRLWNLKVPAKIKIFGWRALKGLV 561

Query: 174 PTKKVLFDRHNCDSDVCPRCLSKHETIEHVLFSCSCLERIW 296
           P + +L +RH  DS  CP C +  E I+H++F+C+  +++W
Sbjct: 562 PCRAILANRHVGDSGGCPVCQNGPEDIKHMIFTCARAKQVW 602