BLASTX nr result
ID: Coptis21_contig00037589
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00037589 (428 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABN07997.1| contains similarity to reverse trancriptase , rel... 71 8e-11 gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 68 9e-10 gb|EAZ37852.1| hypothetical protein OsJ_22198 [Oryza sativa Japo... 66 3e-09 gb|ABA96203.1| retrotransposon protein, putative, unclassified, ... 65 4e-09 gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japo... 65 4e-09 >gb|ABN07997.1| contains similarity to reverse trancriptase , related [Medicago truncatula] Length = 407 Score = 71.2 bits (173), Expect = 8e-11 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Frame = +3 Query: 6 GVFTVKSAYNWFYNQLPKFVVSFSLSFVKN-VRNLI*KLHAPYRIKLFVWKVMKGILPTK 182 G+++VKS YN + + + S S + + I LH R K+ +W+++ LP + Sbjct: 291 GIYSVKSGYNTLRTWQTQQINNTSTSSDETLIWKKIWSLHTIPRHKVLLWRILNDSLPVR 350 Query: 183 KVLFDRHNCDSDVCPRCLSKHETIEHVLFSCSCLERIWFASPLALNFSNWPRNFNIN 353 L R +CPRC SK ETI H+ SC +R+WF S L +NF N P IN Sbjct: 351 SSLRKRGIQCYPLCPRCHSKTETITHLFMSCPLSKRVWFGSNLCINFDNLPNPNFIN 407 >gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1225 Score = 67.8 bits (164), Expect = 9e-10 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Frame = +3 Query: 3 NGVFTVKSAYNWFYNQL--PKFVVSFSLSFVKNVRNLI*KLHAPYRIKLFVWKVMKGILP 176 +G +TVKS Y W L P + F V ++ + K+ + K F W+ + G L Sbjct: 890 SGNYTVKSGY-WAARDLSRPTCDLPFQGPSVSALQAQVWKIKTTRKFKHFEWQCLSGCLA 948 Query: 177 TKKVLFDRHNCDSDVCPRCLSKHETIEHVLFSCSCLERIWFASPLALNFSNWPRN 341 T + LF RH VCPRC ++ E+I H+LF C +IW SP+ + +PRN Sbjct: 949 TNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRN 1003 >gb|EAZ37852.1| hypothetical protein OsJ_22198 [Oryza sativa Japonica Group] Length = 446 Score = 66.2 bits (160), Expect = 3e-09 Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 7/105 (6%) Frame = +3 Query: 3 NGVFTVKSAYNWFYN-------QLPKFVVSFSLSFVKNVRNLI*KLHAPYRIKLFVWKVM 161 +G+F+V+SAY+ +N +LP S S N+ KL +P +IK+F W+++ Sbjct: 214 SGIFSVRSAYHCQWNAKFGSKERLPDSASSSSRPVWDNMW----KLESPPKIKIFAWRML 269 Query: 162 KGILPTKKVLFDRHNCDSDVCPRCLSKHETIEHVLFSCSCLERIW 296 G++P K +L D+H CP C S E I+H++F+C + IW Sbjct: 270 HGVIPCKGILADKHIAVQGGCPVCPSGVEDIKHMVFTCKRAKLIW 314 >gb|ABA96203.1| retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group] Length = 1378 Score = 65.5 bits (158), Expect = 4e-09 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%) Frame = +3 Query: 3 NGVFTVKSAYN--WFYNQLPKFV-VSFSLSFVKNVRNLI*KLHAPYRIKLFVWKVMKGIL 173 +G F+VKSAY+ W Y + + S + + + L P +IK+F W+ +KG++ Sbjct: 472 SGTFSVKSAYHCQWDYKFGERSAQMQASTASRSRLWKRLWNLKVPAKIKIFGWRALKGLV 531 Query: 174 PTKKVLFDRHNCDSDVCPRCLSKHETIEHVLFSCSCLERIW 296 P + +L +RH DS CP C + E I+H++F+C+ +++W Sbjct: 532 PCRAILANRHVGDSGGCPVCQNGPEDIKHMIFTCARAKQVW 572 >gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japonica Group] Length = 1395 Score = 65.5 bits (158), Expect = 4e-09 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%) Frame = +3 Query: 3 NGVFTVKSAYN--WFYNQLPKFV-VSFSLSFVKNVRNLI*KLHAPYRIKLFVWKVMKGIL 173 +G F+VKSAY+ W Y + + S + + + L P +IK+F W+ +KG++ Sbjct: 502 SGTFSVKSAYHCQWDYKFGERSAQMQASTASRSRLWKRLWNLKVPAKIKIFGWRALKGLV 561 Query: 174 PTKKVLFDRHNCDSDVCPRCLSKHETIEHVLFSCSCLERIW 296 P + +L +RH DS CP C + E I+H++F+C+ +++W Sbjct: 562 PCRAILANRHVGDSGGCPVCQNGPEDIKHMIFTCARAKQVW 602