BLASTX nr result

ID: Coptis21_contig00037574 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037574
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07
ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|2...    60   1e-07
ref|NP_192993.2| F-box protein CPR30 [Arabidopsis thaliana] gi|1...    58   7e-07
dbj|BAF01202.1| hypothetical protein [Arabidopsis thaliana]            58   7e-07
emb|CAB41726.1| putative protein [Arabidopsis thaliana] gi|72679...    58   7e-07

>ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|222867152|gb|EEF04283.1|
           predicted protein [Populus trichocarpa]
          Length = 419

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
 Frame = -1

Query: 333 KFQEVPLP-YFGDMRTFSMDITELGGELCLFCDFKSL-VTL*LMKDYSVKESWTKMFSIK 160
           KF E+P P Y     +F +D+  L G LC+ C+++ + V + +M++Y +KESW KMFS++
Sbjct: 254 KFFELPQPNYESKGMSFQVDVGVLEGNLCVMCNYEYVCVDVWVMREYGMKESWCKMFSVQ 313

Query: 159 --KPIGELHTRNLLIPLCFTTSGALILIKV--RTLVLYDPKDGKLVSLKIEGIP 10
             K IG       L PL ++  G  +L++V    LV YD K+     +KI G P
Sbjct: 314 GIKWIGAF---MFLRPLIYSKDGGKVLLEVNDEKLVWYDWKNKHAKVVKIRGGP 364


>ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|222854764|gb|EEE92311.1|
           predicted protein [Populus trichocarpa]
          Length = 400

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
 Frame = -1

Query: 333 KFQEVPLP-YFGDMRTFSMDITELGGELCLFCDFKSL-VTL*LMKDYSVKESWTKMFSIK 160
           KF E+P P Y      F +D+  L G LC+ C+++ + V + +MK+Y VKESW KMFS+ 
Sbjct: 246 KFFELPQPDYENKGMNFHVDVGVLEGNLCVMCNYEHVCVDVWVMKEYGVKESWCKMFSV- 304

Query: 159 KPIGELHTRNLLIPLCFTTSGALILIKV--RTLVLYDPKDGKLVSLKIEGIP 10
             I  +     L PL ++  G ++L++V    L+ YD K+     +++ G P
Sbjct: 305 HAIKWISAFMFLRPLVYSKGGDMVLLEVNGEKLLWYDWKNKHAKVVRVRGGP 356


>ref|NP_192993.2| F-box protein CPR30 [Arabidopsis thaliana]
           gi|145333023|ref|NP_001078377.1| F-box protein CPR30
           [Arabidopsis thaliana]
           gi|142989747|sp|Q9SU30.2|CPR30_ARATH RecName: Full=F-box
           protein CPR30; AltName: Full=Protein CONSTITUTIVE
           EXPRESSER OF PR GENES 30 gi|332657747|gb|AEE83147.1|
           F-box protein CPR30 [Arabidopsis thaliana]
           gi|332657748|gb|AEE83148.1| F-box protein CPR30
           [Arabidopsis thaliana]
          Length = 413

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/94 (34%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
 Frame = -1

Query: 282 MDITELGGELCLFCDF-KSLVTL*LMKDYSVKESWTKMFSIKKPIGELHTRNLLIPLCFT 106
           MDI  L G LCL C++ +S V + +MK+Y+V++SWTK+F+++KP   + + + + PL ++
Sbjct: 263 MDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKP-KSVKSFSYMRPLVYS 321

Query: 105 TSGALILIKVRT--LVLYDPKDGKLVSLKIEGIP 10
                +L+++    LV +D +  K+ +L+I+  P
Sbjct: 322 KDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCP 355


>dbj|BAF01202.1| hypothetical protein [Arabidopsis thaliana]
          Length = 413

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/94 (34%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
 Frame = -1

Query: 282 MDITELGGELCLFCDF-KSLVTL*LMKDYSVKESWTKMFSIKKPIGELHTRNLLIPLCFT 106
           MDI  L G LCL C++ +S V + +MK+Y+V++SWTK+F+++KP   + + + + PL ++
Sbjct: 263 MDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKP-KSVKSFSYMRPLVYS 321

Query: 105 TSGALILIKVRT--LVLYDPKDGKLVSLKIEGIP 10
                +L+++    LV +D +  K+ +L+I+  P
Sbjct: 322 KDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCP 355


>emb|CAB41726.1| putative protein [Arabidopsis thaliana] gi|7267958|emb|CAB78299.1|
           putative protein [Arabidopsis thaliana]
          Length = 408

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/94 (34%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
 Frame = -1

Query: 282 MDITELGGELCLFCDF-KSLVTL*LMKDYSVKESWTKMFSIKKPIGELHTRNLLIPLCFT 106
           MDI  L G LCL C++ +S V + +MK+Y+V++SWTK+F+++KP   + + + + PL ++
Sbjct: 263 MDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKP-KSVKSFSYMRPLVYS 321

Query: 105 TSGALILIKVRT--LVLYDPKDGKLVSLKIEGIP 10
                +L+++    LV +D +  K+ +L+I+  P
Sbjct: 322 KDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCP 355


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