BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037563
         (318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   105   4e-21
emb|CAB75484.1| putative protein [Arabidopsis thaliana]                98   8e-19
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    95   7e-18
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    95   7e-18
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    92   6e-17

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  105 bits (262), Expect = 4e-21
 Identities = 51/82 (62%), Positives = 65/82 (79%)
 Frame = +1

Query: 73  YGSSLSVKVDISQAYDTLSWEFLEMVMKKQGFCDTWCTRVMAIIKSAKLSILINGGPCGY 252
           +G +L+ KVDIS+A+DTL+W+FL  V+K+ GF +T+C  + AI++SAKLSI ING   GY
Sbjct: 253 FGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQGY 312

Query: 253 ISVGRGVRQGDPLSPLLFALAE 318
            S  RGVRQGDPLSPLLF LAE
Sbjct: 313 FSCSRGVRQGDPLSPLLFCLAE 334


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 44/76 (57%), Positives = 55/76 (72%)
 Frame = +1

Query: 85  LSVKVDISQAYDTLSWEFLEMVMKKQGFCDTWCTRVMAIIKSAKLSILINGGPCGYISVG 264
           ++VK D+S+AYD + W+FLE  M+  GFCD W   +MA +KS   S+LING P GYIS  
Sbjct: 192 MAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPT 251

Query: 265 RGVRQGDPLSPLLFAL 312
           RG+RQGDPLSP LF L
Sbjct: 252 RGIRQGDPLSPYLFIL 267


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 42/76 (55%), Positives = 55/76 (72%)
 Frame = +1

Query: 85  LSVKVDISQAYDTLSWEFLEMVMKKQGFCDTWCTRVMAIIKSAKLSILINGGPCGYISVG 264
           ++VK D+S+AYD + W+FLE  M+  GFC+ W   +MA +KS   S+LING P GYI+  
Sbjct: 727 MAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPT 786

Query: 265 RGVRQGDPLSPLLFAL 312
           RG+RQGDPLSP LF L
Sbjct: 787 RGIRQGDPLSPYLFIL 802


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 42/76 (55%), Positives = 55/76 (72%)
 Frame = +1

Query: 85   LSVKVDISQAYDTLSWEFLEMVMKKQGFCDTWCTRVMAIIKSAKLSILINGGPCGYISVG 264
            ++VK D+S+AYD + W+FLE  M+  GFC+ W   +MA +KS   S+LING P GYI+  
Sbjct: 953  MAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPT 1012

Query: 265  RGVRQGDPLSPLLFAL 312
            RG+RQGDPLSP LF L
Sbjct: 1013 RGIRQGDPLSPYLFIL 1028


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 41/86 (47%), Positives = 64/86 (74%)
 Frame = +1

Query: 61  KKVKYGSSLSVKVDISQAYDTLSWEFLEMVMKKQGFCDTWCTRVMAIIKSAKLSILINGG 240
           +K +YG ++++KVDI++A+DTL W FL  V+++ GF + +   ++ I++SA+LS+L+NG 
Sbjct: 575 EKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGK 634

Query: 241 PCGYISVGRGVRQGDPLSPLLFALAE 318
             G+ +   GVRQGDPLSPLLF L E
Sbjct: 635 AVGFFTCSHGVRQGDPLSPLLFCLVE 660