BLASTX nr result
ID: Coptis21_contig00037558
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00037558
(353 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containi... 114 8e-24
emb|CBI29931.3| unnamed protein product [Vitis vinifera] 114 8e-24
ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containi... 105 5e-21
ref|XP_002319164.1| predicted protein [Populus trichocarpa] gi|2... 99 5e-19
ref|XP_002525440.1| pentatricopeptide repeat-containing protein,... 93 2e-17
>ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 114 bits (285), Expect = 8e-24
Identities = 55/97 (56%), Positives = 73/97 (75%), Gaps = 3/97 (3%)
Frame = +2
Query: 38 MCSSACNLSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFCEMQKSG 217
+C+ +L ++G + LA+ +FE+L ++++SWVAMIS LSQNG E EA+ LFC+M KS
Sbjct: 149 VCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSA 208
Query: 218 TIPTPYVFSSALSASTK---YKYGEQLHGQVLKWGLS 319
IPTPYVFSS LSA TK +K GEQLHG ++KWGLS
Sbjct: 209 VIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLS 245
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Frame = +2
Query: 101 FEKLSSRNNISWVAMISALSQNGHEKEALNLFCEMQKSGTIPTPYVFSSALSA---STKY 271
FEK+ +++NISW A+IS +Q+GH +EAL +F +M ++G + F SA+SA +
Sbjct: 574 FEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANI 633
Query: 272 KYGEQLHGQVLKWGLSLFTIGELILFS 352
K G+Q+H ++K G T +L +
Sbjct: 634 KQGKQIHAMMIKTGYDSETEASNVLIT 660
Score = 57.0 bits (136), Expect = 2e-06
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Frame = +2
Query: 38 MCSSACNLSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFCEMQ--- 208
+C++ L G + A+ IF K+ R+ IS+ ++IS L+Q G AL LF +MQ
Sbjct: 250 VCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDC 309
Query: 209 -KSGTIPTPYVFSSALSASTKYKYGEQLHGQVLKWGLS 319
K + + S+ S YK G+QLH V+K G+S
Sbjct: 310 MKPDCVTVASLLSACASVGAGYK-GKQLHSYVIKMGMS 346
>emb|CBI29931.3| unnamed protein product [Vitis vinifera]
Length = 838
Score = 114 bits (285), Expect = 8e-24
Identities = 55/97 (56%), Positives = 73/97 (75%), Gaps = 3/97 (3%)
Frame = +2
Query: 38 MCSSACNLSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFCEMQKSG 217
+C+ +L ++G + LA+ +FE+L ++++SWVAMIS LSQNG E EA+ LFC+M KS
Sbjct: 149 VCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSA 208
Query: 218 TIPTPYVFSSALSASTK---YKYGEQLHGQVLKWGLS 319
IPTPYVFSS LSA TK +K GEQLHG ++KWGLS
Sbjct: 209 VIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLS 245
Score = 57.0 bits (136), Expect = 2e-06
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Frame = +2
Query: 38 MCSSACNLSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFCEMQ--- 208
+C++ L G + A+ IF K+ R+ IS+ ++IS L+Q G AL LF +MQ
Sbjct: 250 VCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDC 309
Query: 209 -KSGTIPTPYVFSSALSASTKYKYGEQLHGQVLKWGLS 319
K + + S+ S YK G+QLH V+K G+S
Sbjct: 310 MKPDCVTVASLLSACASVGAGYK-GKQLHSYVIKMGMS 346
>ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 105 bits (261), Expect = 5e-21
Identities = 54/103 (52%), Positives = 73/103 (70%), Gaps = 3/103 (2%)
Frame = +2
Query: 29 SSHMCSSACNLSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFCEMQ 208
S +C+ +L ++G ++ A+ +F+ L R+++SWVAM+S LSQ+G E+EA+ LFC+M
Sbjct: 204 SLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMH 263
Query: 209 KSGTIPTPYVFSSALSASTK---YKYGEQLHGQVLKWGLSLFT 328
SG PTPY+FSS LSA TK YK GEQLHG VLK G SL T
Sbjct: 264 TSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLET 306
Score = 64.3 bits (155), Expect = 1e-08
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Frame = +2
Query: 56 NLSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFCEMQKSGTIPTPY 235
+L G + A F+K+ S++NISW ++IS +Q+GH +EAL+LF +M K+G +
Sbjct: 617 SLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSF 676
Query: 236 VFSSALSAS---TKYKYGEQLHGQVLKWG 313
F A+SA+ K G+Q+H ++K G
Sbjct: 677 TFGPAVSAAANVANVKLGKQIHAMIIKTG 705
>ref|XP_002319164.1| predicted protein [Populus trichocarpa] gi|222857540|gb|EEE95087.1|
predicted protein [Populus trichocarpa]
Length = 989
Score = 98.6 bits (244), Expect = 5e-19
Identities = 50/93 (53%), Positives = 66/93 (70%), Gaps = 3/93 (3%)
Frame = +2
Query: 59 LSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFCEMQKSGTIPTPYV 238
L ++G I A+ +F+ L +++++SWVAMIS SQNG+E+EA++LFCEM +G PTPYV
Sbjct: 156 LYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYV 215
Query: 239 FSSALSASTKYK---YGEQLHGQVLKWGLSLFT 328
FSS LS TK K GEQLH V K+G SL T
Sbjct: 216 FSSVLSGCTKIKLFDVGEQLHALVFKYGSSLET 248
Score = 55.8 bits (133), Expect = 3e-06
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = +2
Query: 56 NLSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFCEMQKSGTIPTPY 235
+L G I A FEK+ ++++ISW +IS +Q+G+ ++AL +F +M ++ + +
Sbjct: 559 SLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFF 618
Query: 236 VFSSALSAS---TKYKYGEQLHGQVLKWG 313
F SA+SA+ K G+Q+H ++K G
Sbjct: 619 TFGSAVSAAANIANIKQGKQIHAMIIKRG 647
Score = 55.1 bits (131), Expect = 6e-06
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Frame = +2
Query: 20 SVISSHMCSSACNLSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFC 199
S + +++C++ L A+ +F K+ S++ +S+ ++IS L+Q G AL LF
Sbjct: 244 SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFT 303
Query: 200 EMQKSGTIPTPYVFSSALSASTKYKY---GEQLHGQVLKWGLS 319
+M++ P +S LSA GEQLH V+K G+S
Sbjct: 304 KMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGIS 346
>ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535253|gb|EEF36930.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 878
Score = 93.2 bits (230), Expect = 2e-17
Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Frame = +2
Query: 29 SSHMCSSACNLSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFCEMQ 208
SS C+ +L ++G I A+ +F++L ++++SWVA+IS+ SQNG +EA+ LFCEM
Sbjct: 223 SSIACNPLIDLYAKNGFIRSARKVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCEMH 282
Query: 209 KSGTIPTPYVFSSALSASTK---YKYGEQLHGQVLKWGLSLFT 328
SG PTPYVFSS LSA K + GEQLH V K G L T
Sbjct: 283 ISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKCGFFLET 325
Score = 60.1 bits (144), Expect = 2e-07
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Frame = +2
Query: 56 NLSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFCEMQKSGTIPTPY 235
+L G I A FEK+ ++++ISW A++S +Q+G+ +EAL +F +M ++ + +
Sbjct: 636 SLYARCGRIQEANLAFEKIDAKDSISWNALMSGFAQSGYCEEALKIFAQMTRANIKASLF 695
Query: 236 VFSSALSAS---TKYKYGEQLHGQVLKWG 313
F SA+SA+ K G+Q+H ++K G
Sbjct: 696 TFGSAVSAAANMANIKQGKQIHAMIMKTG 724
Score = 58.9 bits (141), Expect = 4e-07
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Frame = +2
Query: 26 ISSHMCSSACNLSKESGGISLAQSIFEKLSSRNNISWVAMISALSQNGHEKEALNLFCEM 205
+ +++C++ L G AQ +F K+ ++ +S+ ++IS LSQ G AL LF +M
Sbjct: 323 LETYVCNALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELFKKM 382
Query: 206 QKSGTIPTPYVFSSALSASTKYK---YGEQLHGQVLKWGLSLFTIGE 337
Q P +S LSA K GEQLH +K G+ L I E
Sbjct: 383 QLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLDIIIE 429