BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037403
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   100   9e-20
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    91   7e-17
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    75   7e-12
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta...    74   1e-11
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    71   1e-10

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  100 bits (250), Expect = 9e-20
 Identities = 50/101 (49%), Positives = 66/101 (65%)
 Frame = -2

Query: 334 LNRFGFSSTFCNMIMKVLSSAKISIMINXXXXXXXXXXXGLRQGDPLSPILFALAEDTLS 155
           L +FGFS TFCN I  +L SAK+SI IN           G+RQGDPLSP+LF LAED LS
Sbjct: 279 LKQFGFSETFCNWIDAILQSAKLSICINGSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLS 338

Query: 154 RAIIRLQLSGRITPMAFAGKCPSPTHLLFADDIILFANGSL 32
           R++ +L   G++  M     C  P+H+L+ADDI++F NG +
Sbjct: 339 RSLTKLVEQGKLKQMRGTRNCLVPSHILYADDIMIFCNGGI 379


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 42/107 (39%), Positives = 66/107 (61%)
 Frame = -2

Query: 334 LNRFGFSSTFCNMIMKVLSSAKISIMINXXXXXXXXXXXGLRQGDPLSPILFALAEDTLS 155
           L RFGF   F + I+ +L SA++S+++N           G+RQGDPLSP+LF L E+ LS
Sbjct: 605 LQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLS 664

Query: 154 RAIIRLQLSGRITPMAFAGKCPSPTHLLFADDIILFANGSLKGLVHL 14
           RA+      G++ PM++      PTH+L+ADD+++F  G+ + +  L
Sbjct: 665 RALSMAATDGQLIPMSYCRGVSFPTHILYADDVLIFCTGTKRNIRRL 711


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 40/109 (36%), Positives = 60/109 (55%)
 Frame = -2

Query: 334 LNRFGFSSTFCNMIMKVLSSAKISIMINXXXXXXXXXXXGLRQGDPLSPILFALAEDTLS 155
           L  FGF+  FCN I  +L S+K+ I +N           G+RQGDPLSP+LF + E+ LS
Sbjct: 340 LKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLS 399

Query: 154 RAIIRLQLSGRITPMAFAGKCPSPTHLLFADDIILFANGSLKGLVHLRN 8
           R+I  L   G I  +A +     P H  + DD+++F    +  L+ L++
Sbjct: 400 RSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKS 448


>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1094

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 40/96 (41%), Positives = 54/96 (56%)
 Frame = -2

Query: 322 GFSSTFCNMIMKVLSSAKISIMINXXXXXXXXXXXGLRQGDPLSPILFALAEDTLSRAII 143
           GF+ST+ N +M  +SS   S++IN           GLRQGDPLSP LF L  + L   + 
Sbjct: 326 GFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILN 385

Query: 142 RLQLSGRITPMAFAGKCPSPTHLLFADDIILFANGS 35
           + +  G+I+ + F G  PS  HLLFADD +L    S
Sbjct: 386 QAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKAS 421


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 38/111 (34%), Positives = 61/111 (54%)
 Frame = -2

Query: 334 LNRFGFSSTFCNMIMKVLSSAKISIMINXXXXXXXXXXXGLRQGDPLSPILFALAEDTLS 155
           L++ GFS  + N +M+ +SS + ++ IN           G+RQGDP+SP LF L  + LS
Sbjct: 608 LSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLS 667

Query: 154 RAIIRLQLSGRITPMAFAGKCPSPTHLLFADDIILFANGSLKGLVHLRNAL 2
             + + +++G +  +      P  +HLLFADD I FA    + +  L+N L
Sbjct: 668 CLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTL 718