BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037386
         (595 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat...   132   3e-29
ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat...   129   4e-28
ref|XP_002511572.1| pentatricopeptide repeat-containing protein,...   125   6e-27
ref|XP_002316516.1| predicted protein [Populus trichocarpa] gi|2...   117   1e-24
ref|XP_002887547.1| pentatricopeptide repeat-containing protein ...   117   1e-24

>ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  132 bits (333), Expect = 3e-29
 Identities = 67/93 (72%), Positives = 74/93 (79%), Gaps = 8/93 (8%)
 Frame = +1

Query: 1   RILNCFCVNHRVSDAVGIIHLMVAKGIVPEIVNTIFESDKKNVAAPKIIVEDLLKKGHIN 180
           R+LNC CV  +V +AVGIIHLM+ KGIVPE VNTIFE+DKK VAAPKI+VEDLLKKGHI 
Sbjct: 651 RVLNCLCVKDKVHEAVGIIHLMLQKGIVPETVNTIFEADKKVVAAPKILVEDLLKKGHIA 710

Query: 181 YYAYELLYDGIRDKKLLKK--------HRGRVS 255
           YY YELLYDGIRDKK+LKK        HRG  S
Sbjct: 711 YYTYELLYDGIRDKKILKKRLPTVNSLHRGASS 743


>ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera] gi|297733985|emb|CBI15232.3|
           unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  129 bits (324), Expect = 4e-28
 Identities = 59/79 (74%), Positives = 71/79 (89%)
 Frame = +1

Query: 1   RILNCFCVNHRVSDAVGIIHLMVAKGIVPEIVNTIFESDKKNVAAPKIIVEDLLKKGHIN 180
           R+LNC C+  RV +AVGIIHLMV KGIVPE+VNTIFE+DKK VAAPKI+VE+L+KKGHI 
Sbjct: 676 RVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVVNTIFEADKKEVAAPKIVVENLMKKGHIT 735

Query: 181 YYAYELLYDGIRDKKLLKK 237
           Y+AYE+L+DGIRDKKL +K
Sbjct: 736 YFAYEILHDGIRDKKLSRK 754


>ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550687|gb|EEF52174.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 735

 Score =  125 bits (314), Expect = 6e-27
 Identities = 59/78 (75%), Positives = 67/78 (85%)
 Frame = +1

Query: 1   RILNCFCVNHRVSDAVGIIHLMVAKGIVPEIVNTIFESDKKNVAAPKIIVEDLLKKGHIN 180
           R++NC CV HRV +AVGI+HLMV  G+VPE V TIF++DKK VAAPKIIVEDLLKK HI 
Sbjct: 649 RVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVVTIFDADKKAVAAPKIIVEDLLKKSHIT 708

Query: 181 YYAYELLYDGIRDKKLLK 234
           YYAYELLYDGIR+KKL K
Sbjct: 709 YYAYELLYDGIRNKKLQK 726


>ref|XP_002316516.1| predicted protein [Populus trichocarpa] gi|222865556|gb|EEF02687.1|
           predicted protein [Populus trichocarpa]
          Length = 761

 Score =  117 bits (294), Expect = 1e-24
 Identities = 56/79 (70%), Positives = 65/79 (82%)
 Frame = +1

Query: 1   RILNCFCVNHRVSDAVGIIHLMVAKGIVPEIVNTIFESDKKNVAAPKIIVEDLLKKGHIN 180
           R++NC CV HRV +AV IIH MV  GIVPE+VN+I E+DKK VAAPKI+VEDLLK+  I 
Sbjct: 677 RVINCLCVQHRVHEAVDIIHFMVHNGIVPEVVNSISEADKKVVAAPKIVVEDLLKRSCIT 736

Query: 181 YYAYELLYDGIRDKKLLKK 237
           YYAYELLYDGIRDKK  K+
Sbjct: 737 YYAYELLYDGIRDKKTQKQ 755


>ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297333388|gb|EFH63806.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 763

 Score =  117 bits (293), Expect = 1e-24
 Identities = 54/79 (68%), Positives = 65/79 (82%)
 Frame = +1

Query: 1   RILNCFCVNHRVSDAVGIIHLMVAKGIVPEIVNTIFESDKKNVAAPKIIVEDLLKKGHIN 180
           R++NC CV  RV +A GIIH MV KG+VPE VNTIF+ DKK VAAPK+++EDLLKK  I 
Sbjct: 677 RVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTIFDHDKKEVAAPKLVLEDLLKKSCIT 736

Query: 181 YYAYELLYDGIRDKKLLKK 237
           YYAYELL+DG+RDK+L KK
Sbjct: 737 YYAYELLFDGLRDKRLRKK 755