BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036983
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAU90328.2| Pentatricopeptide repeat domain containing protei...   111   5e-23
ref|XP_002512846.1| pentatricopeptide repeat-containing protein,...   107   1e-21
ref|XP_003624492.1| Pentatricopeptide repeat-containing protein ...   106   2e-21
ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat...   103   1e-20
ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   103   2e-20

>gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  111 bits (278), Expect = 5e-23
 Identities = 46/99 (46%), Positives = 73/99 (73%)
 Frame = -1

Query: 301 RNAVTWTVIMGGYARSNQVSEVFQLFYGMRLGGIDPDHITFTTVLSVINDYDRVKQAVQV 122
           RN V+WT+++GGY+++NQ  E F L+  M   G+ PDHITF T+LS  +D   +K+ +Q+
Sbjct: 106 RNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQI 165

Query: 121 HGLVLKFGYGSTLVVCYTLVDCYCKCCCLDLARRVFNEM 5
           H  +++FG+ ++L+V  +LVD YCK CCLD+A ++F+EM
Sbjct: 166 HSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEM 204


>ref|XP_002512846.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547857|gb|EEF49349.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 553

 Score =  107 bits (266), Expect = 1e-21
 Identities = 50/99 (50%), Positives = 68/99 (68%)
 Frame = -1

Query: 301 RNAVTWTVIMGGYARSNQVSEVFQLFYGMRLGGIDPDHITFTTVLSVINDYDRVKQAVQV 122
           R AVTWT+++GGY + +Q SE F+LF  M   G  PD++TF T+LS  ND +  K+  QV
Sbjct: 106 RTAVTWTILIGGYCQFDQFSEAFKLFSNMIRDGKKPDYVTFATLLSGCNDPEMTKELFQV 165

Query: 121 HGLVLKFGYGSTLVVCYTLVDCYCKCCCLDLARRVFNEM 5
           H  V+K G+GS +++C +LVD YCK   LDLA R+F EM
Sbjct: 166 HTHVVKLGHGSAVIICNSLVDSYCKMHRLDLAHRIFKEM 204


>ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355499507|gb|AES80710.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  106 bits (264), Expect = 2e-21
 Identities = 51/100 (51%), Positives = 69/100 (69%)
 Frame = -1

Query: 304 QRNAVTWTVIMGGYARSNQVSEVFQLFYGMRLGGIDPDHITFTTVLSVINDYDRVKQAVQ 125
           QR AVTWT+++GGYA++NQ  E F LF  M   GIDPDH++  T+LS   ++D V +  Q
Sbjct: 160 QRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQ 219

Query: 124 VHGLVLKFGYGSTLVVCYTLVDCYCKCCCLDLARRVFNEM 5
           VH  V+K GY STLVV  +L+D YCK   L LA ++FN++
Sbjct: 220 VHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDI 259


>ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  103 bits (257), Expect = 1e-20
 Identities = 50/101 (49%), Positives = 67/101 (66%)
 Frame = -1

Query: 304 QRNAVTWTVIMGGYARSNQVSEVFQLFYGMRLGGIDPDHITFTTVLSVINDYDRVKQAVQ 125
           QR+ VTWT+++GGYA+ N+  E F LF  M   G+ PDHIT  T+LS   +++ V +  Q
Sbjct: 101 QRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQ 160

Query: 124 VHGLVLKFGYGSTLVVCYTLVDCYCKCCCLDLARRVFNEMA 2
           VHG V+K GY STL+VC +L+D YCK   L LA  +F  MA
Sbjct: 161 VHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMA 201


>ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  103 bits (256), Expect = 2e-20
 Identities = 47/100 (47%), Positives = 67/100 (67%)
 Frame = -1

Query: 304 QRNAVTWTVIMGGYARSNQVSEVFQLFYGMRLGGIDPDHITFTTVLSVINDYDRVKQAVQ 125
           +R AV+WT+++GGY +SNQ  E F+L+  MR GGI+PD++T  T+LS   + +     VQ
Sbjct: 102 ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQ 161

Query: 124 VHGLVLKFGYGSTLVVCYTLVDCYCKCCCLDLARRVFNEM 5
           +H  V+K GY   L+VC +LVD YCK  CL LA ++F  M
Sbjct: 162 IHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHM 201



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/99 (28%), Positives = 49/99 (49%)
 Frame = -1

Query: 301 RNAVTWTVIMGGYARSNQVSEVFQLFYGMRLGGIDPDHITFTTVLSVINDYDRVKQAVQV 122
           ++ V WT ++  Y +  +  E   +F  MR  G+  D  TF ++L    +   +    Q+
Sbjct: 406 KSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQL 465

Query: 121 HGLVLKFGYGSTLVVCYTLVDCYCKCCCLDLARRVFNEM 5
           H L+++ G+ S +     L+D Y KC C+  A + F EM
Sbjct: 466 HSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEM 504



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 33/99 (33%), Positives = 47/99 (47%)
 Frame = -1

Query: 301 RNAVTWTVIMGGYARSNQVSEVFQLFYGMRLGGIDPDHITFTTVLSVINDYDRVKQAVQV 122
           ++ VT+  +M GY+      E  +LF  +   GI P   TF  +LS     D  K   QV
Sbjct: 204 KDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQV 263

Query: 121 HGLVLKFGYGSTLVVCYTLVDCYCKCCCLDLARRVFNEM 5
           HG VLK  +   + V   L+D Y K   +D   ++F EM
Sbjct: 264 HGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEM 302