BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036910
         (392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus]    162   2e-38
ref|XP_002866187.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] gi...   160   8e-38
dbj|BAA97366.1| unnamed protein product [Arabidopsis thaliana]        160   8e-38
ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana] gi|75174554...   160   8e-38
emb|CBI17913.3| unnamed protein product [Vitis vinifera]              159   2e-37

>ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus]
          Length = 1214

 Score =  162 bits (411), Expect = 2e-38
 Identities = 81/122 (66%), Positives = 97/122 (79%)
 Frame = +1

Query: 25  VPFSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGL 204
           + F+VL S+++W+                LD +C SPS YF++IRLILPSLDRERG+YGL
Sbjct: 5   IKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDTFC-SPSHYFSAIRLILPSLDRERGTYGL 63

Query: 205 KESVLATCLIDALGISRESEDAVRLINWRKGGAKTGVNVGNFALVASEVLQRRQSLSSGG 384
           KESVLATCLIDALG+SR+SEDA+RLINWRKGGAKTG N GNFALVA+EVLQRRQ ++ GG
Sbjct: 64  KESVLATCLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFALVAAEVLQRRQGMTPGG 123

Query: 385 LT 390
           LT
Sbjct: 124 LT 125


>ref|XP_002866187.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata]
           gi|297312022|gb|EFH42446.1| ATLIG4 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1221

 Score =  160 bits (406), Expect = 8e-38
 Identities = 81/123 (65%), Positives = 96/123 (78%), Gaps = 1/123 (0%)
 Frame = +1

Query: 25  VPFSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGL 204
           + FSVL S++NW+                LD YCK PSDYF ++RLI+PSLDRERGSYGL
Sbjct: 5   IKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCK-PSDYFVAVRLIIPSLDRERGSYGL 63

Query: 205 KESVLATCLIDALGISRESEDAVRLINWRKGG-AKTGVNVGNFALVASEVLQRRQSLSSG 381
           KESVLATCLIDALGISR++ DAVRL+NWRKGG AK G N GNF+L+A+EVLQRRQ ++SG
Sbjct: 64  KESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMASG 123

Query: 382 GLT 390
           GLT
Sbjct: 124 GLT 126


>dbj|BAA97366.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1184

 Score =  160 bits (406), Expect = 8e-38
 Identities = 81/123 (65%), Positives = 96/123 (78%), Gaps = 1/123 (0%)
 Frame = +1

Query: 25  VPFSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGL 204
           + FSVL S++NW+                LD YCK PSDYF ++RLI+PSLDRERGSYGL
Sbjct: 5   IKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCK-PSDYFVAVRLIIPSLDRERGSYGL 63

Query: 205 KESVLATCLIDALGISRESEDAVRLINWRKGG-AKTGVNVGNFALVASEVLQRRQSLSSG 381
           KESVLATCLIDALGISR++ DAVRL+NWRKGG AK G N GNF+L+A+EVLQRRQ ++SG
Sbjct: 64  KESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMASG 123

Query: 382 GLT 390
           GLT
Sbjct: 124 GLT 126


>ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana]
           gi|75174554|sp|Q9LL84.1|DNLI4_ARATH RecName: Full=DNA
           ligase 4; AltName: Full=DNA ligase IV; AltName:
           Full=Polydeoxyribonucleotide synthase [ATP] 4
           gi|9651815|gb|AAF91284.1|AF233527_1 DNA ligase IV
           [Arabidopsis thaliana] gi|332009474|gb|AED96857.1| DNA
           ligase 4 [Arabidopsis thaliana]
          Length = 1219

 Score =  160 bits (406), Expect = 8e-38
 Identities = 81/123 (65%), Positives = 96/123 (78%), Gaps = 1/123 (0%)
 Frame = +1

Query: 25  VPFSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGL 204
           + FSVL S++NW+                LD YCK PSDYF ++RLI+PSLDRERGSYGL
Sbjct: 5   IKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCK-PSDYFVAVRLIIPSLDRERGSYGL 63

Query: 205 KESVLATCLIDALGISRESEDAVRLINWRKGG-AKTGVNVGNFALVASEVLQRRQSLSSG 381
           KESVLATCLIDALGISR++ DAVRL+NWRKGG AK G N GNF+L+A+EVLQRRQ ++SG
Sbjct: 64  KESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMASG 123

Query: 382 GLT 390
           GLT
Sbjct: 124 GLT 126


>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
          Length = 1163

 Score =  159 bits (402), Expect = 2e-37
 Identities = 80/120 (66%), Positives = 94/120 (78%)
 Frame = +1

Query: 31  FSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGLKE 210
           FSVLCS++ W+                LD +C +    F++IRLILP+LDRERGSYGLKE
Sbjct: 7   FSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCIN-GHQFSAIRLILPNLDRERGSYGLKE 65

Query: 211 SVLATCLIDALGISRESEDAVRLINWRKGGAKTGVNVGNFALVASEVLQRRQSLSSGGLT 390
           SVLATCLIDALG+SRESEDA+RLINWRKGGAKTG N GNFA+VA+EVLQRRQ ++SGGLT
Sbjct: 66  SVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAMVAAEVLQRRQGMTSGGLT 125