BLASTX nr result

ID: Coptis21_contig00036829 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036829
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74990.1| hypothetical protein VITISV_008657 [Vitis vinifera]    57   4e-07

>emb|CAN74990.1| hypothetical protein VITISV_008657 [Vitis vinifera]
          Length = 1140

 Score = 57.0 bits (136), Expect(2) = 4e-07
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
 Frame = +1

Query: 34  KMQNEQHHVLHSIELLEMDPELGIQNKLEKVEINV*DKGKALNKEREQKLNNMNRLRE*T 213
           K Q+E+  ++H  ELL+ + E  IQN+ E++E  + ++ K   +ERE++LNN+N LRE  
Sbjct: 597 KAQSEKSQMIHDFELLKRELETDIQNRQEELEKQLQEREKVFEEERERELNNVNYLREVA 656

Query: 214 SSATK*MGPFAI-VGKESEEVSSWKKFFNDSNLNYRTTSTNLMFYLRSSLIKMKDLENFL 390
               + +    + + KE +EV++ KK  ++     R     L+   R    K+KD     
Sbjct: 657 RQEMEEVKLERLRIEKEKQEVAANKKHLDEHQFEMRKDIDELVSLSR----KLKDQRELF 712

Query: 391 SR 396
           S+
Sbjct: 713 SK 714



 Score = 21.6 bits (44), Expect(2) = 4e-07
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 2   SMEHERLVLPEKCK 43
           SMEHE+ VL EK +
Sbjct: 586 SMEHEQSVLSEKAQ 599


Top