BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036798
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    94   1e-17
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...    92   3e-17
ref|XP_002447837.1| hypothetical protein SORBIDRAFT_06g016627 [S...    89   5e-16
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    88   8e-16
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    86   3e-15

>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 44/119 (36%), Positives = 68/119 (57%)
 Frame = +2

Query: 2   GQSVNKNKSRMFAGGMSMDXXXXXXXXXXXXVGVFPEKYMGVPLFKGRVTRAVLTPLLDR 181
           GQ +N  KS +FAGG++              VG  P  Y+G P+FKG+       P+ D+
Sbjct: 458 GQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADK 517

Query: 182 IKKRITGWRGKLLSFQGRRVLINSVLSSIPVYNMGVYKWPRSIIKEAECIMRNFLWTGN 358
           +K ++  W+  LLS  GR  L+ SV+ S+ V+ M +Y WP  I+KE E  ++NF+W+G+
Sbjct: 518 VKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGD 576


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 42/116 (36%), Positives = 70/116 (60%)
 Frame = +2

Query: 11  VNKNKSRMFAGGMSMDXXXXXXXXXXXXVGVFPEKYMGVPLFKGRVTRAVLTPLLDRIKK 190
           VN NKS +FAG +S+              G  P  Y+GVP+FKG+     L P++D+I  
Sbjct: 2   VNPNKSTVFAGSISVSKLNQLINIIGFNHGTLPFTYLGVPIFKGKPKVIHLQPIVDKIIA 61

Query: 191 RITGWRGKLLSFQGRRVLINSVLSSIPVYNMGVYKWPRSIIKEAECIMRNFLWTGN 358
           +++ W+  LLS  GR  ++ SV+ S+  +++ VY WP S++K+ E  ++NF+W+G+
Sbjct: 62  KLSTWKASLLSIAGRVQMVKSVIQSMLTHSITVYNWPTSLLKDLEKSIKNFIWSGD 117


>ref|XP_002447837.1| hypothetical protein SORBIDRAFT_06g016627 [Sorghum bicolor]
           gi|241939020|gb|EES12165.1| hypothetical protein
           SORBIDRAFT_06g016627 [Sorghum bicolor]
          Length = 448

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 40/85 (47%), Positives = 60/85 (70%)
 Frame = +2

Query: 104 FPEKYMGVPLFKGRVTRAVLTPLLDRIKKRITGWRGKLLSFQGRRVLINSVLSSIPVYNM 283
           FP KY+G+PL  GR+  A L  ++DR K ++ GW+G+L++  GRR L+ SVLSS+PVY M
Sbjct: 7   FPVKYLGLPLTLGRLRMAHLQYIIDRAKGKVAGWQGRLVNVAGRRELVRSVLSSLPVYLM 66

Query: 284 GVYKWPRSIIKEAECIMRNFLWTGN 358
            V K P++ ++E + + R FLW G+
Sbjct: 67  TVIKPPKNFLRELDKLRRRFLWAGD 91


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 36/87 (41%), Positives = 57/87 (65%)
 Frame = +2

Query: 98  GVFPEKYMGVPLFKGRVTRAVLTPLLDRIKKRITGWRGKLLSFQGRRVLINSVLSSIPVY 277
           G FP  Y+GVP+FKG+     L P++D+IK +++ W+  +LS  GR  LI SV  S+ ++
Sbjct: 396 GSFPFNYLGVPIFKGKPKARFLQPIVDKIKTKLSNWKASILSIAGRVQLIKSVAQSMLIH 455

Query: 278 NMGVYKWPRSIIKEAECIMRNFLWTGN 358
            + +Y WP  ++KE E   RNF+W+G+
Sbjct: 456 TITIYDWPSFLLKELETCFRNFIWSGD 482


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
 Frame = +2

Query: 2    GQSVNKNKSRM-FAGGMSMDXXXXXXXXXXXXVGVFPEKYMGVPLFKGRVTRAVLTPLLD 178
            GQ +N  KS + ++ G+S+                  EKY+G+P   GR  +A+   L+D
Sbjct: 715  GQKINYEKSEVSYSRGVSVSQKDELTNILNMRQVDRHEKYLGIPSISGRSKKAIFDSLID 774

Query: 179  RIKKRITGWRGKLLSFQGRRVLINSVLSSIPVYNMGVYKWPRSIIKEAECIMRNFLW 349
            RI K++ GW+ KLLS  G+ VL+ SV+ +IP Y MGVYK+P  II++ +  M  F W
Sbjct: 775  RIWKKLQGWKEKLLSRAGKEVLLKSVIQAIPTYLMGVYKFPVFIIQKIQSAMARFWW 831