BLASTX nr result

ID: Coptis21_contig00036742 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036742
         (549 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24922.3| unnamed protein product [Vitis vinifera]              315   4e-84
ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis v...   315   4e-84
ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|2...   311   3e-83
ref|XP_004165384.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisom...   305   4e-81
ref|XP_004149716.1| PREDICTED: DNA topoisomerase 2-like [Cucumis...   305   4e-81

>emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  315 bits (806), Expect = 4e-84
 Identities = 149/182 (81%), Positives = 165/182 (90%)
 Frame = +2

Query: 2    GSTRGWSVKYYKGLGTSTNVEGQEYFHDLDRHKKDFVWGDEEDGDAIEMAFSKKKIEARK 181
            G+  GWS+KYYKGLGTST+ EG+EYF DL +HKKDF+W DE+DGDAIE+AFSKKKIE RK
Sbjct: 598  GNASGWSIKYYKGLGTSTSKEGKEYFKDLGKHKKDFMWVDEKDGDAIELAFSKKKIEERK 657

Query: 182  NWLRQFEPGTYLDSKEKLIKYGDFVNKELILFSIADLQRSIPSMVDGLKPGQRKILFCSF 361
            NWLRQF+PGTYLD KEKLIKY DFVNKELILFS+ADLQRSIPSMVDGLKPGQRKILFCSF
Sbjct: 658  NWLRQFQPGTYLDQKEKLIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSF 717

Query: 362  KRNLVSSIKISQFSGYVSEHSAYHHGEQSLASTIIGLAQNFVGSNNINLFNPEGQFGSRI 541
            KRN +   KI+QFSGYVSEHSAYHHGEQSLASTIIG+AQ+FVGSNNINL  P GQFG+R 
Sbjct: 718  KRNFIKEAKIAQFSGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRH 777

Query: 542  KG 547
            +G
Sbjct: 778  QG 779


>ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis vinifera]
          Length = 1489

 Score =  315 bits (806), Expect = 4e-84
 Identities = 149/182 (81%), Positives = 165/182 (90%)
 Frame = +2

Query: 2    GSTRGWSVKYYKGLGTSTNVEGQEYFHDLDRHKKDFVWGDEEDGDAIEMAFSKKKIEARK 181
            G+  GWS+KYYKGLGTST+ EG+EYF DL +HKKDF+W DE+DGDAIE+AFSKKKIE RK
Sbjct: 598  GNASGWSIKYYKGLGTSTSKEGKEYFKDLGKHKKDFMWVDEKDGDAIELAFSKKKIEERK 657

Query: 182  NWLRQFEPGTYLDSKEKLIKYGDFVNKELILFSIADLQRSIPSMVDGLKPGQRKILFCSF 361
            NWLRQF+PGTYLD KEKLIKY DFVNKELILFS+ADLQRSIPSMVDGLKPGQRKILFCSF
Sbjct: 658  NWLRQFQPGTYLDQKEKLIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSF 717

Query: 362  KRNLVSSIKISQFSGYVSEHSAYHHGEQSLASTIIGLAQNFVGSNNINLFNPEGQFGSRI 541
            KRN +   KI+QFSGYVSEHSAYHHGEQSLASTIIG+AQ+FVGSNNINL  P GQFG+R 
Sbjct: 718  KRNFIKEAKIAQFSGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRH 777

Query: 542  KG 547
            +G
Sbjct: 778  QG 779


>ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|222845679|gb|EEE83226.1|
            predicted protein [Populus trichocarpa]
          Length = 1468

 Score =  311 bits (798), Expect = 3e-83
 Identities = 147/182 (80%), Positives = 163/182 (89%)
 Frame = +2

Query: 2    GSTRGWSVKYYKGLGTSTNVEGQEYFHDLDRHKKDFVWGDEEDGDAIEMAFSKKKIEARK 181
            G+  GWS+KYYKGLGTST+ EG+ YF  LD+HKKDF+W DE+DGDAIE+AFSKKKIEARK
Sbjct: 595  GNASGWSIKYYKGLGTSTSKEGKAYFQSLDKHKKDFIWMDEQDGDAIELAFSKKKIEARK 654

Query: 182  NWLRQFEPGTYLDSKEKLIKYGDFVNKELILFSIADLQRSIPSMVDGLKPGQRKILFCSF 361
            NWLRQ+EPGT+LD  +KLIKY DF+NKELILFS+ADLQRSIPSMVDGLKPGQRKILFCSF
Sbjct: 655  NWLRQYEPGTHLDQNQKLIKYSDFINKELILFSMADLQRSIPSMVDGLKPGQRKILFCSF 714

Query: 362  KRNLVSSIKISQFSGYVSEHSAYHHGEQSLASTIIGLAQNFVGSNNINLFNPEGQFGSRI 541
            KRN V   KISQFSGYVSEHSAYHHGEQSLASTIIG+AQ+FVGSNNINL  P GQFG+R 
Sbjct: 715  KRNFVKEAKISQFSGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRS 774

Query: 542  KG 547
             G
Sbjct: 775  VG 776


>ref|XP_004165384.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-like [Cucumis
            sativus]
          Length = 1460

 Score =  305 bits (780), Expect = 4e-81
 Identities = 144/182 (79%), Positives = 160/182 (87%)
 Frame = +2

Query: 2    GSTRGWSVKYYKGLGTSTNVEGQEYFHDLDRHKKDFVWGDEEDGDAIEMAFSKKKIEARK 181
            G+  GWS+KYYKGLGTST+ EG+EYF  L +HKKDF+W D+ DG+AIE+AFSKKKIE RK
Sbjct: 562  GNASGWSIKYYKGLGTSTSKEGREYFEQLTKHKKDFIWQDDNDGEAIELAFSKKKIEDRK 621

Query: 182  NWLRQFEPGTYLDSKEKLIKYGDFVNKELILFSIADLQRSIPSMVDGLKPGQRKILFCSF 361
            NWLRQFEPGT+LD   KLIKY DFVNKELILFS+ADLQRSIPSMVDGLKPGQRKILFCSF
Sbjct: 622  NWLRQFEPGTHLDQTGKLIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSF 681

Query: 362  KRNLVSSIKISQFSGYVSEHSAYHHGEQSLASTIIGLAQNFVGSNNINLFNPEGQFGSRI 541
            KRN +   K+SQFSGYVSEHSAYHHGEQSLASTIIG+AQ+FVGSNNINL  P GQFG+R 
Sbjct: 682  KRNFIKEAKVSQFSGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRN 741

Query: 542  KG 547
             G
Sbjct: 742  HG 743


>ref|XP_004149716.1| PREDICTED: DNA topoisomerase 2-like [Cucumis sativus]
          Length = 1459

 Score =  305 bits (780), Expect = 4e-81
 Identities = 144/182 (79%), Positives = 160/182 (87%)
 Frame = +2

Query: 2    GSTRGWSVKYYKGLGTSTNVEGQEYFHDLDRHKKDFVWGDEEDGDAIEMAFSKKKIEARK 181
            G+  GWS+KYYKGLGTST+ EG+EYF  L +HKKDF+W D+ DG+AIE+AFSKKKIE RK
Sbjct: 562  GNASGWSIKYYKGLGTSTSKEGREYFEQLTKHKKDFIWQDDNDGEAIELAFSKKKIEDRK 621

Query: 182  NWLRQFEPGTYLDSKEKLIKYGDFVNKELILFSIADLQRSIPSMVDGLKPGQRKILFCSF 361
            NWLRQFEPGT+LD   KLIKY DFVNKELILFS+ADLQRSIPSMVDGLKPGQRKILFCSF
Sbjct: 622  NWLRQFEPGTHLDQTGKLIKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSF 681

Query: 362  KRNLVSSIKISQFSGYVSEHSAYHHGEQSLASTIIGLAQNFVGSNNINLFNPEGQFGSRI 541
            KRN +   K+SQFSGYVSEHSAYHHGEQSLASTIIG+AQ+FVGSNNINL  P GQFG+R 
Sbjct: 682  KRNFIKEAKVSQFSGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRN 741

Query: 542  KG 547
             G
Sbjct: 742  HG 743


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