BLASTX nr result

ID: Coptis21_contig00036712 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036712
         (401 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containi...    65   4e-09
emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]    65   4e-09
ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containi...    55   8e-06

>ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 474

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 33/54 (61%), Positives = 35/54 (64%)
 Frame = +1

Query: 1   ERVVKKILMLEPHNHGVYVVLSNMYAEVGR*EXXXXXXXXXXXXXXXXXPGWSL 162
           ERVVK+IL+LEPHNHGVYVVLSNMYAE GR E                 PGWSL
Sbjct: 416 ERVVKEILVLEPHNHGVYVVLSNMYAEAGRWEDVLRLRKVMKSGNLKKTPGWSL 469


>emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
          Length = 476

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 33/54 (61%), Positives = 35/54 (64%)
 Frame = +1

Query: 1   ERVVKKILMLEPHNHGVYVVLSNMYAEVGR*EXXXXXXXXXXXXXXXXXPGWSL 162
           ERVVK+IL+LEPHNHGVYVVLSNMYAE GR E                 PGWSL
Sbjct: 418 ERVVKEILVLEPHNHGVYVVLSNMYAEAGRWEDVLRLRKVMKSGNLKKTPGWSL 471


>ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 465

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/54 (51%), Positives = 31/54 (57%)
 Frame = +1

Query: 1   ERVVKKILMLEPHNHGVYVVLSNMYAEVGR*EXXXXXXXXXXXXXXXXXPGWSL 162
           ERVVK IL LEP NHGV+V LSNMYAE G+ +                 PGWSL
Sbjct: 409 ERVVKDILALEPQNHGVHVALSNMYAEAGQWQEVLRLRKTMKEERLKKAPGWSL 462


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