BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036404
         (383 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containi...    81   1e-13
ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containi...    74   2e-11
ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containi...    69   5e-10
ref|XP_002301924.1| predicted protein [Populus trichocarpa] gi|2...    68   7e-10
ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containi...    68   7e-10

>ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 48/111 (43%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
 Frame = +1

Query: 28  F*SLHHHLQYASTPTTTFSHYSHPLRYPHPLTP-QPAAXXXXXXXXXXXXXNNDLTSLHN 204
           F S+  H+ +   PTT   H +H   + H L P Q  A              +D+ S HN
Sbjct: 13  FPSISIHVTHFHFPTTHHRH-NHNHNHNHVLPPPQSTANPITAKPIILEEGPDDILSFHN 71

Query: 205 RKYDFTPLLNYLSSSTTLKDSNS----PTSLNPTELHLVESYKAVPAHLWH 345
           R+YDFTPLL +LS+ +T  DS+S    PTSL  TE  L ESY+AVPA LWH
Sbjct: 72  RRYDFTPLLTFLSNPSTTSDSDSNSTPPTSLGSTEFQLAESYRAVPAPLWH 122


>ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 40/93 (43%), Positives = 53/93 (56%)
 Frame = +1

Query: 67  PTTTFSHYSHPLRYPHPLTPQPAAXXXXXXXXXXXXXNNDLTSLHNRKYDFTPLLNYLSS 246
           P+ +   +SH         PQ +A              +D+ SLHNR+YDFTPLL++LS 
Sbjct: 14  PSPSTHRHSHHNNIHFLPPPQSSASPITAKPTILEEGPDDILSLHNRRYDFTPLLSFLS- 72

Query: 247 STTLKDSNSPTSLNPTELHLVESYKAVPAHLWH 345
             T  +S+ PTSL+ TE  L ESY+AVPA LWH
Sbjct: 73  --TTSNSSPPTSLDSTEFQLAESYRAVPAPLWH 103


>ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
           gi|449489420|ref|XP_004158306.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 43/124 (34%), Positives = 56/124 (45%), Gaps = 22/124 (17%)
 Frame = +1

Query: 40  HHHLQYASTPTTTFSHYSHPLRYPHPLTPQPAAXXXXXXXXXXXXXNNDLTSLHNRKYDF 219
           HHH  + +T   +FS +S P      L                    ND  SL +R+YDF
Sbjct: 27  HHHNPHIATTHLSFSFFSAPATSSSSLV----TCYTSSDNLEFDVFENDPVSLQSRRYDF 82

Query: 220 TPLLNYLSSSTTL----------------------KDSNSPTSLNPTELHLVESYKAVPA 333
           TPLL++LS S+                         D+ SPTSL+PTE  L E+Y+AVPA
Sbjct: 83  TPLLDFLSRSSAYPKFDSDSDSEVEFDSTFNSGSDSDTASPTSLDPTEFQLAEAYRAVPA 142

Query: 334 HLWH 345
            LWH
Sbjct: 143 PLWH 146


>ref|XP_002301924.1| predicted protein [Populus trichocarpa] gi|222843650|gb|EEE81197.1|
           predicted protein [Populus trichocarpa]
          Length = 709

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
 Frame = +1

Query: 40  HHHL----QYASTPTTTFSHYSH--PLRYPHPLTPQPAAXXXXXXXXXXXXXNNDLTSLH 201
           HHH     Q A+TPTTT    ++     +P+       +             ++D+  L 
Sbjct: 24  HHHRILQPQLAATPTTTALTATNLTDSSFPYSKRHHETSQNDIEDYYNDDDDDDDILPLQ 83

Query: 202 NRKYDFTPLLNYLS-----SSTTLKDSNSPTSLNPTELHLVESYKAVPAHLWH 345
           + +YDFTPL+NYLS     S+ +  DS SPTSL+ TE  L ESY+ VP  LWH
Sbjct: 84  SLRYDFTPLINYLSNKISTSTDSDSDSASPTSLDSTEFQLAESYRVVPGPLWH 136


>ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
           gi|297745544|emb|CBI40709.3| unnamed protein product
           [Vitis vinifera]
          Length = 695

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 6/62 (9%)
 Frame = +1

Query: 178 NNDLTSLHNRKYDFTPLLNYLSSSTTLKDSNS------PTSLNPTELHLVESYKAVPAHL 339
           + DL S+ NR+YDFTPLL +LS+S +  DS +      PTSL+ TE  LVESY+AVPA L
Sbjct: 60  SGDLNSVPNRRYDFTPLLRFLSNSESDSDSGAEVESPPPTSLDFTEFQLVESYRAVPAPL 119

Query: 340 WH 345
           WH
Sbjct: 120 WH 121