BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036319
         (576 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA18102.1| zinc knuckle family protein [Olimarabidopsis pumila]    72   9e-11
ref|XP_002875595.1| zinc knuckle family protein [Arabidopsis lyr...    71   1e-10
ref|NP_189872.1| CCHC-type zinc knuckle protein [Arabidopsis tha...    70   3e-10
ref|XP_002463774.1| hypothetical protein SORBIDRAFT_01g005940 [S...    67   3e-09
dbj|BAJ93454.1| predicted protein [Hordeum vulgare subsp. vulgare]     66   4e-09

>gb|ABA18102.1| zinc knuckle family protein [Olimarabidopsis pumila]
          Length = 369

 Score = 71.6 bits (174), Expect = 9e-11
 Identities = 38/100 (38%), Positives = 48/100 (48%), Gaps = 22/100 (22%)
 Frame = +3

Query: 6   CKTKVSKTSENPGRAFITCPNGAK--GCGLWQWVDEVK-------------------MCS 122
           C    S T +NPGR F  CPN  +  GCG +QW D V+                    C 
Sbjct: 99  CLILTSNTQKNPGRKFYKCPNREENGGCGFFQWCDAVQSSGTTHSYGNTNDSKFPDHQCP 158

Query: 123 CNEGICKIRTSHTPRNPNRKFYRCPQSTKGFAG-CGFFEW 239
           C  G+C++ T+ T  N  R+FYRCP     F G CGFF+W
Sbjct: 159 CGAGLCRVLTAKTGENVGRQFYRCPV----FEGSCGFFKW 194



 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 29/74 (39%), Positives = 42/74 (56%)
 Frame = +3

Query: 18  VSKTSENPGRAFITCPNGAKGCGLWQWVDEVKMCSCNEGICKIRTSHTPRNPNRKFYRCP 197
           ++  S++ G A  T   G    G  ++ +  K C C  G+C I TS+T +NP RKFY+CP
Sbjct: 61  LNPASKSRGVAVTTAGGGGGVVGEQEFPE--KSCPCGVGLCLILTSNTQKNPGRKFYKCP 118

Query: 198 QSTKGFAGCGFFEW 239
              +   GCGFF+W
Sbjct: 119 NREEN-GGCGFFQW 131


>ref|XP_002875595.1| zinc knuckle family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297321433|gb|EFH51854.1| zinc knuckle family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 337

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 38/101 (37%), Positives = 48/101 (47%), Gaps = 23/101 (22%)
 Frame = +3

Query: 6   CKTKVSKTSENPGRAFITCPNGAK--GCGLWQWVDEVK--------------------MC 119
           C    S T +NPGR F  CPN  +  GCG +QW D V+                     C
Sbjct: 102 CLVLTSTTPKNPGRKFYKCPNREENGGCGFFQWCDAVQSSGTTTHSYGNTNDSKFPDHQC 161

Query: 120 SCNEGICKIRTSHTPRNPNRKFYRCPQSTKGFAG-CGFFEW 239
            C  G+C++ T+ T  N  R+FYRCP     F G CGFF+W
Sbjct: 162 PCGAGLCRVLTAKTGENVGRQFYRCPV----FEGSCGFFKW 198



 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 23/43 (53%), Positives = 29/43 (67%)
 Frame = +3

Query: 111 KMCSCNEGICKIRTSHTPRNPNRKFYRCPQSTKGFAGCGFFEW 239
           K C C  G+C + TS TP+NP RKFY+CP   +   GCGFF+W
Sbjct: 93  KSCPCGVGLCLVLTSTTPKNPGRKFYKCPNREEN-GGCGFFQW 134


>ref|NP_189872.1| CCHC-type zinc knuckle protein [Arabidopsis thaliana]
           gi|7529257|emb|CAB86673.1| putative protein [Arabidopsis
           thaliana] gi|17529084|gb|AAL38752.1| unknown protein
           [Arabidopsis thaliana] gi|22136980|gb|AAM91719.1|
           unknown protein [Arabidopsis thaliana]
           gi|332644235|gb|AEE77756.1| CCHC-type zinc knuckle
           protein [Arabidopsis thaliana]
          Length = 372

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 38/104 (36%), Positives = 48/104 (46%), Gaps = 26/104 (25%)
 Frame = +3

Query: 6   CKTKVSKTSENPGRAFITCPNGAK--GCGLWQWVDEVK---------------------- 113
           C    S T +NPGR F  CPN  +  GCG +QW D V+                      
Sbjct: 103 CLILTSNTPKNPGRKFYKCPNREENGGCGFFQWCDAVQSSGTSTTTSNSYGNGNDTKFPD 162

Query: 114 -MCSCNEGICKIRTSHTPRNPNRKFYRCPQSTKGFAG-CGFFEW 239
             C C  G+C++ T+ T  N  R+FYRCP     F G CGFF+W
Sbjct: 163 HQCPCGAGLCRVLTAKTGENVGRQFYRCPV----FEGSCGFFKW 202



 Score = 62.0 bits (149), Expect = 7e-08
 Identities = 25/43 (58%), Positives = 30/43 (69%)
 Frame = +3

Query: 111 KMCSCNEGICKIRTSHTPRNPNRKFYRCPQSTKGFAGCGFFEW 239
           K C C  GIC I TS+TP+NP RKFY+CP   +   GCGFF+W
Sbjct: 94  KSCPCGVGICLILTSNTPKNPGRKFYKCPNREEN-GGCGFFQW 135


>ref|XP_002463774.1| hypothetical protein SORBIDRAFT_01g005940 [Sorghum bicolor]
           gi|241917628|gb|EER90772.1| hypothetical protein
           SORBIDRAFT_01g005940 [Sorghum bicolor]
          Length = 366

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
 Frame = +3

Query: 6   CKTKVSKTSENPGRAFITCPNGAKGCGLWQWVDEVK---------------------MCS 122
           C    S T +NPGR F  CP    GC  ++W D                        +C 
Sbjct: 147 CLVLTSNTLKNPGRKFYKCPTRDGGCNFFEWCDAPSPAPANARNNMVLHSETSATDMLCP 206

Query: 123 CNEGICKIRTSHTPRNPNRKFYRCPQSTKGFAGCGFFEW 239
           C  G C I T+ T +N  R+F+RCP + +G   CGFF+W
Sbjct: 207 CGAGTCLILTTKTGKNVGRQFFRCPLN-QGGGSCGFFKW 244


>dbj|BAJ93454.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 371

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 33/62 (53%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = +3

Query: 69  GAKGCGLWQWVD-----EVKMCSCNEGICKIRTSHTPRNPNRKFYRCPQSTKGFAGCGFF 233
           G  G G   +VD     E K C C  GIC + TS TPRNP RKFYRCP  T+   GC FF
Sbjct: 124 GGIGGGAGGYVDMGGEVEEKACPCGSGICLVLTSSTPRNPGRKFYRCP--TRDNGGCNFF 181

Query: 234 EW 239
           EW
Sbjct: 182 EW 183



 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 36/102 (35%), Positives = 44/102 (43%), Gaps = 24/102 (23%)
 Frame = +3

Query: 6   CKTKVSKTSENPGRAFITCP---NGAKGCGLWQWVDEVKM-------------------- 116
           C    S T  NPGR F  CP   NG  GC  ++W D   +                    
Sbjct: 152 CLVLTSSTPRNPGRKFYRCPTRDNG--GCNFFEWCDAPSLGPANARSNTCSQSDASIVNM 209

Query: 117 -CSCNEGICKIRTSHTPRNPNRKFYRCPQSTKGFAGCGFFEW 239
            CSC  G C I T+    N  R+FYRCP   +G + CGFF+W
Sbjct: 210 PCSCGAGTCLILTTKAGVNVGRQFYRCP--AQGGSSCGFFKW 249