BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036047
         (626 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containi...   105   5e-21
ref|NP_196771.1| pentatricopeptide repeat-containing protein [Ar...    77   2e-12
ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arab...    75   7e-12
ref|XP_002528578.1| pentatricopeptide repeat-containing protein,...    75   1e-11
ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containi...    66   5e-09

>ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  105 bits (263), Expect = 5e-21
 Identities = 57/157 (36%), Positives = 90/157 (57%)
 Frame = +1

Query: 154 STSTSLTPDNKNEDVEKQLHTXXXXXXXXXXXXCYDSAKTQLNSLLFSKTHFISPSYLFH 333
           ST+ + T + + +  E+  H               ++A+  + S+L  K+ F SPS+L+ 
Sbjct: 42  STTNNSTTNLQGQVQEQARHEHVQKLQTLLQQGRTETARRLIRSMLLPKSPFSSPSHLYT 101

Query: 334 HFPFSSNAVKHSFSSLLFTTCVDSKLANEAKEIFFLMKKDGMFPHTAELNKFLEMLVAMG 513
            F  SS  +K  FS +L + C +SK+ +E+ E++ LMKKDG+ P  A LN FLE LV+  
Sbjct: 102 LFSLSSTPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTK 161

Query: 514 KFKFVLEFFNVIVECGVRVGGFSYNKVVQCEVKLGNL 624
           +++  L+ F+ IVE G+R   F Y K +Q  VKLG+L
Sbjct: 162 RYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDL 198


>ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
           gi|9759377|dbj|BAB10028.1| unnamed protein product
           [Arabidopsis thaliana] gi|28973713|gb|AAO64173.1|
           unknown protein [Arabidopsis thaliana]
           gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis
           thaliana] gi|110737169|dbj|BAF00534.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332004380|gb|AED91763.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 45/124 (36%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 259 DSAKTQLNSLLFS-KTHFISPSYLFHHFPFSSNAVKHSFSSLLFTTCV-DSKLANEAKEI 432
           ++A+  L+SLL S  T F SP  LF  F  SS ++KH FS LL +  + +SK+ +EA ++
Sbjct: 72  ETARGVLSSLLRSDSTPFASPKELFSAFSLSSPSLKHDFSYLLLSVLLNESKMISEAADL 131

Query: 433 FFLMKKDGMFPHTAELNKFLEMLVAMGKFKFVLEFFNVIVECGVRVGGFSYNKVVQCEVK 612
           FF ++ +G++P +  L   L+ LV   +F+  +  F  I+E   R   F Y K +Q  VK
Sbjct: 132 FFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVK 191

Query: 613 LGNL 624
           L ++
Sbjct: 192 LSDV 195


>ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata] gi|297317348|gb|EFH47770.1| hypothetical protein
           ARALYDRAFT_350399 [Arabidopsis lyrata subsp. lyrata]
          Length = 1202

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
 Frame = +1

Query: 259 DSAKTQLNSLLFSKTH-FISPSYLFHHFPFSSNAVKHSFSSLLFTTCV-DSKLANEAKEI 432
           ++A+  L SLL S +  F SP  LF  F  SS ++KH FS LL +  + +SK+ +EA ++
Sbjct: 445 ETARGVLYSLLRSDSAPFTSPKELFSAFSLSSPSLKHDFSYLLLSVLLNESKMISEAADL 504

Query: 433 FFLMKKDGMFPHTAELNKFLEMLVAMGKFKFVLEFFNVIVECGVRVGGFSYNKVVQCEVK 612
           FF ++ +G+FP +  L   L+ LV   +F+  +  F  I+E   R   F Y K +Q  VK
Sbjct: 505 FFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVK 564

Query: 613 LGNL 624
           L ++
Sbjct: 565 LSDV 568


>ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531974|gb|EEF33786.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 817

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 43/124 (34%), Positives = 64/124 (51%)
 Frame = +1

Query: 253 CYDSAKTQLNSLLFSKTHFISPSYLFHHFPFSSNAVKHSFSSLLFTTCVDSKLANEAKEI 432
           C ++A +   SL+ +K+ F SPS LF  F   S  ++ + S +L + C  SK+  EA E+
Sbjct: 69  CNEAAYSLAKSLILTKSTFSSPSDLFSCFSACSIPLRITLSDMLLSVCCKSKMLREAVEL 128

Query: 433 FFLMKKDGMFPHTAELNKFLEMLVAMGKFKFVLEFFNVIVECGVRVGGFSYNKVVQCEVK 612
           +  M++DG  P    L+     LV   +F  V++ F  I   G R   F Y K +Q  VK
Sbjct: 129 YEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVK 188

Query: 613 LGNL 624
           L NL
Sbjct: 189 LQNL 192


>ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 43/121 (35%), Positives = 60/121 (49%)
 Frame = +1

Query: 262 SAKTQLNSLLFSKTHFISPSYLFHHFPFSSNAVKHSFSSLLFTTCVDSKLANEAKEIFFL 441
           +A+  L SLL +KT F S S L  H        K  FS  L   C  SK+ +EA +++  
Sbjct: 59  TARRFLRSLLLTKTAFSSLSELHAHVS------KPFFSDNLLWLCSVSKMLDEATDLYST 112

Query: 442 MKKDGMFPHTAELNKFLEMLVAMGKFKFVLEFFNVIVECGVRVGGFSYNKVVQCEVKLGN 621
           M+KDG  P T  +N+ L  LV    F+  L  F  +++ G R    +Y K VQ  V L +
Sbjct: 113 MRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKD 172

Query: 622 L 624
           L
Sbjct: 173 L 173