BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036029
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t...    59   2e-11
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi...    55   1e-07
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi...    60   1e-07
ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    45   1e-06
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi...    45   1e-06

>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 525

 Score = 59.3 bits (142), Expect(2) = 2e-11
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = +1

Query: 10  SPALTDTYAKCGGMALAKNLFVEMGERDTFCCTS*Y--LYLHGDQKKVLKPSKGMAKLVL 183
           S +L D YAKCG + LAK LF  M  RD  C  +    + +HGD K  LK    M K+ +
Sbjct: 278 STSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGV 337

Query: 184 SLIDVTFNSGFTACCYS 234
              D+TF + FTAC YS
Sbjct: 338 KPDDITFIAVFTACSYS 354



 Score = 34.3 bits (77), Expect(2) = 2e-11
 Identities = 20/41 (48%), Positives = 24/41 (58%)
 Frame = +2

Query: 254 IPPKCEHYEWMVNFLS*AGSFEEAKGWPMLVARYICLKWPG 376
           I PK EHY  +V+ LS AG FEEA    M++ R I   W G
Sbjct: 373 IVPKSEHYGCLVDLLSRAGLFEEA----MVMIRKITNSWNG 409


>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score = 54.7 bits (130), Expect(2) = 1e-07
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = +1

Query: 10  SPALTDTYAKCGGMALAKNLFVEMGERDTFCCTS*Y--LYLHGDQKKVLKPSKGMAKLVL 183
           S  L D YAKCG + +AK LF  M +RDT C  +    + ++GD    L+    M K  +
Sbjct: 275 STGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGV 334

Query: 184 SLIDVTFNSGFTACCYS 234
              D+TF + FTAC YS
Sbjct: 335 KPDDITFIAIFTACSYS 351



 Score = 26.2 bits (56), Expect(2) = 1e-07
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 260 PKCEHYEWMVNFLS*AGSFEEAK 328
           PK EHY  +V+ L  AG  +EAK
Sbjct: 372 PKSEHYGCIVDLLGRAGLLKEAK 394


>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 35/77 (45%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = +1

Query: 10  SPALTDTYAKCGGMALAKNLFVEMGERDTFCCTS*Y--LYLHGDQKKVLKPSKGMAKLVL 183
           S +L D YAKCG + LAK LF  M ERD  C  +    L +HGD    LK    M K  +
Sbjct: 275 STSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGI 334

Query: 184 SLIDVTFNSGFTACCYS 234
              D+TF + FTAC YS
Sbjct: 335 KPDDITFIAVFTACSYS 351


>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Cucumis sativus]
          Length = 532

 Score = 44.7 bits (104), Expect(2) = 1e-06
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +1

Query: 10  SPALTDTYAKCGGMALAKNLFVEMGERDTFCCTS*Y--LYLHGDQKKVLKPSKGMAKLVL 183
           S  L D YAKCG + LAK LF EM +RD  C  +    + + GD +  +K    M K  +
Sbjct: 275 STGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGI 334

Query: 184 SLIDVTFNSGFTACCYS 234
              ++TF + + AC  S
Sbjct: 335 KPDNITFIAVWXACSNS 351



 Score = 32.7 bits (73), Expect(2) = 1e-06
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = +2

Query: 239 RYWNG------IPPKCEHYEWMVNFLS*AGSFEEAKG 331
           R WN       I PK EHY  +++ LS  G FEEA+G
Sbjct: 359 RIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEG 395


>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score = 44.7 bits (104), Expect(2) = 1e-06
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +1

Query: 10  SPALTDTYAKCGGMALAKNLFVEMGERDTFCCTS*Y--LYLHGDQKKVLKPSKGMAKLVL 183
           S  L D YAKCG + LAK LF EM +RD  C  +    + + GD +  +K    M K  +
Sbjct: 275 STGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGI 334

Query: 184 SLIDVTFNSGFTACCYS 234
              ++TF +   AC  S
Sbjct: 335 KPDNITFIAVLAACSNS 351



 Score = 32.7 bits (73), Expect(2) = 1e-06
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = +2

Query: 239 RYWNG------IPPKCEHYEWMVNFLS*AGSFEEAKG 331
           R WN       I PK EHY  +++ LS  G FEEA+G
Sbjct: 359 RIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEG 395