BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035573
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG22120.1| polyprotein [Cynara cardunculus var. scolymus]         129   3e-28
gb|ABM55238.1| integrase [Beta vulgaris]                              128   6e-28
gb|ABH08430.1| putative integrase [Beta vulgaris]                     128   6e-28
gb|ABN08974.1| gag-pol polyprotein, putative [Medicago truncatula]    127   1e-27
gb|ABA98121.1| retrotransposon protein, putative, Ty1-copia subc...   125   5e-27

>gb|ABG22120.1| polyprotein [Cynara cardunculus var. scolymus]
          Length = 349

 Score =  129 bits (323), Expect = 3e-28
 Identities = 61/106 (57%), Positives = 81/106 (76%)
 Frame = -3

Query: 319 SFLLEKGFSRGSVDKPLFLKKIKGDVLIAQIYVDDIVFGSTCESCALSFADIMSSEFEMS 140
           +FLLE GFSRG +D  LFL+K KG+V++ QIYVDDI+FG+T ES    F+ +M S++E S
Sbjct: 55  TFLLENGFSRGKIDNTLFLRKHKGNVILVQIYVDDIIFGATKESMCRKFSKLMQSKYETS 114

Query: 139 MVGELSYFLGLQVRQMDKGIFIS*SKYAKDLVKKFGLDSAKLAHTP 2
           ++GEL++FLGLQV+Q DKGIFI+ SKY KDL+KKF  +      TP
Sbjct: 115 LMGELTFFLGLQVKQSDKGIFINQSKYVKDLLKKFDFNECSSMKTP 160


>gb|ABM55238.1| integrase [Beta vulgaris]
          Length = 1516

 Score =  128 bits (321), Expect = 6e-28
 Identities = 59/105 (56%), Positives = 82/105 (78%)
 Frame = -3

Query: 316  FLLEKGFSRGSVDKPLFLKKIKGDVLIAQIYVDDIVFGSTCESCALSFADIMSSEFEMSM 137
            FLLE  F RG VDK LFLK    D+L+ QIYVDDI+FG+T E+    F+ ++S+EFEMSM
Sbjct: 1173 FLLENNFKRGKVDKTLFLKSKGTDILLVQIYVDDIIFGATNETLCKEFSRLVSNEFEMSM 1232

Query: 136  VGELSYFLGLQVRQMDKGIFIS*SKYAKDLVKKFGLDSAKLAHTP 2
            +GEL++FLGLQ++Q +KGI +   KY K+L+KK+GL+++K+ HTP
Sbjct: 1233 MGELNFFLGLQIKQTEKGIIVHQQKYIKELLKKYGLENSKINHTP 1277


>gb|ABH08430.1| putative integrase [Beta vulgaris]
          Length = 1516

 Score =  128 bits (321), Expect = 6e-28
 Identities = 59/105 (56%), Positives = 82/105 (78%)
 Frame = -3

Query: 316  FLLEKGFSRGSVDKPLFLKKIKGDVLIAQIYVDDIVFGSTCESCALSFADIMSSEFEMSM 137
            FLLE  F RG VDK LFLK    D+L+ QIYVDDI+FG+T E+    F+ ++S+EFEMSM
Sbjct: 1173 FLLENNFKRGKVDKTLFLKSKGTDILLVQIYVDDIIFGATNETLCKEFSRLVSNEFEMSM 1232

Query: 136  VGELSYFLGLQVRQMDKGIFIS*SKYAKDLVKKFGLDSAKLAHTP 2
            +GEL++FLGLQ++Q +KGI +   KY K+L+KK+GL+++K+ HTP
Sbjct: 1233 MGELNFFLGLQIKQTEKGIIVHQQKYIKELLKKYGLENSKINHTP 1277


>gb|ABN08974.1| gag-pol polyprotein, putative [Medicago truncatula]
          Length = 469

 Score =  127 bits (318), Expect = 1e-27
 Identities = 63/105 (60%), Positives = 77/105 (73%)
 Frame = -3

Query: 316 FLLEKGFSRGSVDKPLFLKKIKGDVLIAQIYVDDIVFGSTCESCALSFADIMSSEFEMSM 137
           FL+ +G+ +G  DK LF+KK  G V+IAQIYVDDIVFG         F   M SEFEMS+
Sbjct: 148 FLINQGYKKGGTDKTLFVKKEHGGVMIAQIYVDDIVFGGMSNQMVQHFVQQMQSEFEMSL 207

Query: 136 VGELSYFLGLQVRQMDKGIFIS*SKYAKDLVKKFGLDSAKLAHTP 2
           VGEL+YFLGLQ+RQM+  IFIS SKYAK++V+KFGLD+A    TP
Sbjct: 208 VGELTYFLGLQIRQMEDTIFISQSKYAKNIVRKFGLDNASHKRTP 252


>gb|ABA98121.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 613

 Score =  125 bits (313), Expect = 5e-27
 Identities = 61/105 (58%), Positives = 76/105 (72%)
 Frame = -3

Query: 316 FLLEKGFSRGSVDKPLFLKKIKGDVLIAQIYVDDIVFGSTCESCALSFADIMSSEFEMSM 137
           FLL+ GF  G  D  LF KK K D+ I QIYVDDI+FGST  S    F+ IM+  FEMSM
Sbjct: 443 FLLKNGFEIGKADTTLFTKKFKSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSM 502

Query: 136 VGELSYFLGLQVRQMDKGIFIS*SKYAKDLVKKFGLDSAKLAHTP 2
           +GEL++FLGLQV+Q  +G FIS +KY KD++KKFG++ AKL  TP
Sbjct: 503 MGELTFFLGLQVKQAQEGTFISQTKYVKDILKKFGMEDAKLIKTP 547