BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035496
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containi...   137   7e-31
emb|CBI40590.3| unnamed protein product [Vitis vinifera]              137   7e-31
ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containi...   118   6e-25
ref|XP_002523296.1| pentatricopeptide repeat-containing protein,...   115   5e-24
ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containi...   114   1e-23

>ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  137 bits (346), Expect = 7e-31
 Identities = 65/100 (65%), Positives = 79/100 (79%)
 Frame = -1

Query: 300 MNQLKQIHAHTLITGTDQYRFLITKLLEIPNITYAQKMFDTIPQPTTFLYNKLIQAYSSH 121
           MN+LKQI A+TL  G +  + LI  LL+IP+I YA K+FD IP+PT FLYNKLIQAYSSH
Sbjct: 1   MNRLKQIQAYTLRNGIEHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSH 60

Query: 120 GPYTQCLKIYSQMCLRGFWPNPHSFTFLFAACASLLSRQK 1
           GP+ QC  +Y+QMCL+G  PN HSFTFLF+ACASL S Q+
Sbjct: 61  GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQ 100


>emb|CBI40590.3| unnamed protein product [Vitis vinifera]
          Length = 495

 Score =  137 bits (346), Expect = 7e-31
 Identities = 65/100 (65%), Positives = 79/100 (79%)
 Frame = -1

Query: 300 MNQLKQIHAHTLITGTDQYRFLITKLLEIPNITYAQKMFDTIPQPTTFLYNKLIQAYSSH 121
           MN+LKQI A+TL  G +  + LI  LL+IP+I YA K+FD IP+PT FLYNKLIQAYSSH
Sbjct: 1   MNRLKQIQAYTLRNGIEHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSH 60

Query: 120 GPYTQCLKIYSQMCLRGFWPNPHSFTFLFAACASLLSRQK 1
           GP+ QC  +Y+QMCL+G  PN HSFTFLF+ACASL S Q+
Sbjct: 61  GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQ 100


>ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  118 bits (295), Expect = 6e-25
 Identities = 59/98 (60%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
 Frame = -1

Query: 300 MNQLKQIHAHTLITGTDQYRFLITKLLEIPNITYAQKMFDTIPQPTTFLYNKLIQAYSSH 121
           M Q+KQIH +TL  G DQ + LI KLLEIPN+ YA K+    P+PT FLYNKLIQAYSSH
Sbjct: 1   MRQVKQIHGYTLRNGIDQTKILIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSH 60

Query: 120 GPYT-QCLKIYSQMCLRGFWPNPHSFTFLFAACASLLS 10
             +  QC  +YSQM L  F PN H+F FLF+AC SL S
Sbjct: 61  PQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSS 98


>ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537384|gb|EEF39012.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 353

 Score =  115 bits (287), Expect = 5e-24
 Identities = 57/97 (58%), Positives = 65/97 (67%)
 Frame = -1

Query: 300 MNQLKQIHAHTLITGTDQYRFLITKLLEIPNITYAQKMFDTIPQPTTFLYNKLIQAYSSH 121
           MNQLKQIHA+TL  G D  + L  +L++IPN+ YA K+ D IP P  FLYNKLIQAYS  
Sbjct: 1   MNQLKQIHAYTLRNGIDYNKTLTERLIQIPNVPYAHKLIDLIPSPNVFLYNKLIQAYSFQ 60

Query: 120 GPYTQCLKIYSQMCLRGFWPNPHSFTFLFAACASLLS 10
               QC  IYSQM  R    N H+FTFLFAACAS  S
Sbjct: 61  NQLHQCFSIYSQMRSRNCTGNQHTFTFLFAACASFFS 97


>ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  114 bits (284), Expect = 1e-23
 Identities = 54/97 (55%), Positives = 71/97 (73%)
 Frame = -1

Query: 300 MNQLKQIHAHTLITGTDQYRFLITKLLEIPNITYAQKMFDTIPQPTTFLYNKLIQAYSSH 121
           MNQLKQIHA++L  G D  +FLI KLL++P++ YA  +FD IP+P+ +LYNK IQ +SS 
Sbjct: 1   MNQLKQIHAYSLRNGLDHTKFLIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60

Query: 120 GPYTQCLKIYSQMCLRGFWPNPHSFTFLFAACASLLS 10
           G   +C  +Y QMC +G  PN +SFTFLF ACASL +
Sbjct: 61  GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFN 97