BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035459
         (378 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516925.1| pentatricopeptide repeat-containing protein,...   211   7e-53
ref|XP_002882500.1| pentatricopeptide repeat-containing protein ...   206   2e-51
ref|NP_187348.1| pentatricopeptide repeat-containing protein [Ar...   205   3e-51
ref|XP_003617758.1| Pentatricopeptide repeat-containing protein ...   204   6e-51
ref|XP_002314384.1| predicted protein [Populus trichocarpa] gi|2...   204   6e-51

>ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544013|gb|EEF45539.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 901

 Score =  211 bits (536), Expect = 7e-53
 Identities = 98/124 (79%), Positives = 111/124 (89%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           ++FE ME NR VPCAYAYNTMIMGYGSAGKFDEAY LLERQK +GCIPSVIAYNCILTCL
Sbjct: 324 EIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCL 383

Query: 185 GRKGRVDEALRIIEEMKKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           G+KGR+ EALR  EEMKKDA PNLSTYN+LIDMLC+AG++E+ ++ RDAM+ AGLFPNV 
Sbjct: 384 GKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVM 443

Query: 365 TVNI 376
           TVNI
Sbjct: 444 TVNI 447



 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           +LF  M+    V   +AYNT I G+  +GK ++AY+LLE  K KG  P+V+ Y  ++  L
Sbjct: 603 ELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGL 662

Query: 185 GRKGRVDEALRIIEEMKKDA-EPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNV 361
            +  R+DEA  + EE K +  E N+  Y+ LID   + G+I+  Y   + + + GL PNV
Sbjct: 663 AKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNV 722

Query: 362 WTVN 373
           +T N
Sbjct: 723 YTWN 726



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8    LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
            LFE  + N        Y+++I G+G  G+ DEAY ++E   +KG  P+V  +NC+L  L 
Sbjct: 674  LFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV 733

Query: 188  RKGRVDEALRIIEEMKK-DAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
            +   ++EAL   + MK     PN  TY+ILI+ LCR  K    +     M++ GL PN  
Sbjct: 734  KAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTI 793

Query: 365  T 367
            T
Sbjct: 794  T 794



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
 Frame = +2

Query: 8    LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
            L E M+   R P    Y ++I G     + DEAY L E  K  G   +V+ Y+ ++   G
Sbjct: 639  LLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFG 698

Query: 188  RKGRVDEALRIIEE-MKKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
            + GR+DEA  I+EE M+K   PN+ T+N L+D L +A +I         M+     PN  
Sbjct: 699  KVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHI 758

Query: 365  TVNI 376
            T +I
Sbjct: 759  TYSI 762



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           LFE ++    +P   +Y+ +I G   AG   E Y+L    KE+GC+    AYN  +    
Sbjct: 569 LFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFC 628

Query: 188 RKGRVDEALRIIEEMK-KDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNV 361
           + G+V++A +++EEMK K  +P + TY  +ID L +  +++  Y   +  +  GL  NV
Sbjct: 629 KSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNV 687



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = +2

Query: 56  YNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLGRKGRVDEALRIIEEMK 235
           YN  I  +G AGK D A+K     K  G +P  + Y  ++  L +  R+DEA+ I E+M+
Sbjct: 271 YNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQME 330

Query: 236 KDAE-PNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVWTVN 373
           ++   P    YN +I     AGK +  Y   +  +  G  P+V   N
Sbjct: 331 QNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYN 377



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           L+E M  + ++P A  Y ++I  +   G+ ++ +K+ +    +GC P +   N  + C+ 
Sbjct: 499 LYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVF 558

Query: 188 RKGRVDEALRIIEEMK-KDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAG 346
           + G   +   + EE+K +   P++ +Y+ILI  L +AG     YE   AM+  G
Sbjct: 559 KAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQG 612



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           DL + M   +  P   AY T+I    S  + D    L  + +E G   SV  +  ++   
Sbjct: 184 DLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVF 243

Query: 185 GRKGRVDEALRIIEEMKKDA-EPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPN 358
            R+GR+D AL +++EMK +    ++  YN+ ID   +AGK++  ++    ++  GL P+
Sbjct: 244 AREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPD 302



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           LF  M+        + + T+I  +   G+ D A  LL+  K       ++ YN  + C G
Sbjct: 220 LFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFG 279

Query: 188 RKGRVDEALRIIEEMKKDA-EPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           + G+VD A +   E+K     P+  TY  +I +LC+  +++   E  + ME+    P  +
Sbjct: 280 KAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAY 339

Query: 365 TVN 373
             N
Sbjct: 340 AYN 342



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
 Frame = +2

Query: 41  PCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLGRKGRVDEALRI 220
           P     N MI     A K DEA  + E    K C P  + +  ++  LG++GRVD+A R+
Sbjct: 440 PNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRL 499

Query: 221 IEEM-KKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVWTVN 373
            E+M   D  PN   Y  LI    + G+ E  ++    M   G  P++  +N
Sbjct: 500 YEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLN 551



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
 Frame = +2

Query: 2   GDLFETMELNRR--VPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCIL 175
           G+   T E  ++   P    YN +I     AG+ + A+K+ +  KE G  P+V+  N ++
Sbjct: 390 GEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMI 449

Query: 176 TCLGRKGRVDEALRIIEEMK-KDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLF 352
             L +  ++DEA  I E M  K   P+  T+  LID L + G+++  Y   + M  +   
Sbjct: 450 DRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKI 509

Query: 353 PN 358
           PN
Sbjct: 510 PN 511


>ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297328340|gb|EFH58759.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 871

 Score =  206 bits (523), Expect = 2e-51
 Identities = 97/124 (78%), Positives = 110/124 (88%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           ++FE +E NRRVPC YAYNTMIMGYGSAGKFDEAY LLERQ+ KG IPSVIAYNCILTCL
Sbjct: 294 EMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCL 353

Query: 185 GRKGRVDEALRIIEEMKKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
            + G+VDEALR+ EEMKKDA PNLSTYNILIDMLCRAGK++  +E RD+M++AGLFPNV 
Sbjct: 354 RKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVR 413

Query: 365 TVNI 376
           TVNI
Sbjct: 414 TVNI 417



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 47/124 (37%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           +LF +M+    V    AYN +I G+   GK ++AY+LLE  K KG  P+V+ Y  ++  L
Sbjct: 573 ELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632

Query: 185 GRKGRVDEALRIIEEMK-KDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNV 361
            +  R+DEA  + EE K K  E N+  Y+ LID   + G+I+  Y   + + + GL PNV
Sbjct: 633 AKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNV 692

Query: 362 WTVN 373
           +T N
Sbjct: 693 YTWN 696



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           LFE  +  R       Y+++I G+G  G+ DEAY +LE   +KG  P+V  +N +L  L 
Sbjct: 644 LFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALV 703

Query: 188 RKGRVDEALRIIEEMKK-DAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPN 358
           +   ++EAL   + MK+    PN  TY ILI+ LC+  K    +     M++ G+ P+
Sbjct: 704 KAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPS 761



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           +FE ++  R VP A +Y+ +I G   AG  +E Y+L    KE+GC+    AYN ++    
Sbjct: 539 MFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFC 598

Query: 188 RKGRVDEALRIIEEMK-KDAEPNLSTYNILIDMLCRAGKIESVY 316
           + G+V++A +++EEMK K  EP + TY  +ID L +  +++  Y
Sbjct: 599 KCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAY 642



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           L E M+     P    Y ++I G     + DEAY L E  K K    +V+ Y+ ++   G
Sbjct: 609 LLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 188 RKGRVDEALRIIEE-MKKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           + GR+DEA  I+EE M+K   PN+ T+N L+D L +A +I        +M+     PN  
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQV 728

Query: 365 TVNI 376
           T  I
Sbjct: 729 TYGI 732



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           LF+ M+     P  + + T+I G+   G+ D A  LL+  K       ++ YN  +   G
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249

Query: 188 RKGRVDEALRIIEEMKKDA-EPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           + G+VD A +   E++ +  +P+  TY  +I +LC+A +++   E  + +E+    P  +
Sbjct: 250 KVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTY 309

Query: 365 TVN 373
             N
Sbjct: 310 AYN 312



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           D+ + M   +  P   AY T+I  + +    D    L ++ +E G  P+V  +  ++   
Sbjct: 154 DVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGF 213

Query: 185 GRKGRVDEALRIIEEMKKDA-EPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPN 358
            ++GRVD AL +++EMK  + + ++  YN+ ID   + GK++  ++    +E  GL P+
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPD 272


>ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75186627|sp|Q9M907.1|PP217_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g06920 gi|6728999|gb|AAF26996.1|AC016827_7
           hypothetical protein [Arabidopsis thaliana]
           gi|332640955|gb|AEE74476.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  205 bits (522), Expect = 3e-51
 Identities = 96/124 (77%), Positives = 111/124 (89%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           ++FE +E NRRVPC YAYNTMIMGYGSAGKFDEAY LLERQ+ KG IPSVIAYNCILTCL
Sbjct: 294 EMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCL 353

Query: 185 GRKGRVDEALRIIEEMKKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
            + G+VDEAL++ EEMKKDA PNLSTYNILIDMLCRAGK+++ +E RD+M++AGLFPNV 
Sbjct: 354 RKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVR 413

Query: 365 TVNI 376
           TVNI
Sbjct: 414 TVNI 417



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           +LF +M+    V    AYN +I G+   GK ++AY+LLE  K KG  P+V+ Y  ++  L
Sbjct: 573 ELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632

Query: 185 GRKGRVDEALRIIEEMK-KDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNV 361
            +  R+DEA  + EE K K  E N+  Y+ LID   + G+I+  Y   + + + GL PN+
Sbjct: 633 AKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNL 692

Query: 362 WTVN 373
           +T N
Sbjct: 693 YTWN 696



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           LFE  +  R       Y+++I G+G  G+ DEAY +LE   +KG  P++  +N +L  L 
Sbjct: 644 LFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALV 703

Query: 188 RKGRVDEALRIIEEMKK-DAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPN 358
           +   ++EAL   + MK+    PN  TY ILI+ LC+  K    +     M++ G+ P+
Sbjct: 704 KAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPS 761



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           L E M+     P    Y ++I G     + DEAY L E  K K    +V+ Y+ ++   G
Sbjct: 609 LLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 188 RKGRVDEALRIIEE-MKKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           + GR+DEA  I+EE M+K   PNL T+N L+D L +A +I        +M+     PN  
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQV 728

Query: 365 TVNI 376
           T  I
Sbjct: 729 TYGI 732



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           +FE ++  R VP A +Y+ +I G   AG  +E Y+L    KE+GC+    AYN ++    
Sbjct: 539 MFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFC 598

Query: 188 RKGRVDEALRIIEEMK-KDAEPNLSTYNILIDMLCRAGKIESVY 316
           + G+V++A +++EEMK K  EP + TY  +ID L +  +++  Y
Sbjct: 599 KCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAY 642



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           LF+ M+     P  + + T+I G+   G+ D A  LL+  K       ++ YN  +   G
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249

Query: 188 RKGRVDEALRIIEEMKKDA-EPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           + G+VD A +   E++ +  +P+  TY  +I +LC+A +++   E  + +E+    P  +
Sbjct: 250 KVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTY 309

Query: 365 TVN 373
             N
Sbjct: 310 AYN 312



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           D+ + M   +  P   AY T+I  + +    D    L ++ +E G  P+V  +  ++   
Sbjct: 154 DVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGF 213

Query: 185 GRKGRVDEALRIIEEMKKDA-EPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPN 358
            ++GRVD AL +++EMK  + + ++  YN+ ID   + GK++  ++    +E  GL P+
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPD 272


>ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355519093|gb|AET00717.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  204 bits (519), Expect = 6e-51
 Identities = 94/124 (75%), Positives = 111/124 (89%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           +LFE ++LNR VPC YAYNTMIMGYGSAGKFDEAY LLERQK KGCIPSVIAYNCILTCL
Sbjct: 329 ELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCL 388

Query: 185 GRKGRVDEALRIIEEMKKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           GRKG+V+EALRI +EM++DA PNL+TYNILIDMLC+AG++E+  + +D M+ AGLFPN+ 
Sbjct: 389 GRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIM 448

Query: 365 TVNI 376
           TVNI
Sbjct: 449 TVNI 452



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
 Frame = +2

Query: 53  AYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLGRKGRVDEALRIIEEM 232
           AYNT+I G+  +GK D+AY+LLE  K KG  P+V+ Y  ++  L +  R+DEA  + EE 
Sbjct: 624 AYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEA 683

Query: 233 KK-DAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVWTVN 373
           K    + N+  Y+ LID   + G+I+  Y   + + + GL PN +T N
Sbjct: 684 KSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWN 731



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
 Frame = +2

Query: 56   YNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLGRKGRVDEALRIIEEMK 235
            Y+++I G+G  G+ DEAY +LE   +KG  P+   +NC+L  L +   +DEA    + MK
Sbjct: 695  YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMK 754

Query: 236  K-DAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPN 358
                 PN  TY+I+I+ LC   K    +     M++ GL PN
Sbjct: 755  NLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPN 796



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
 Frame = +2

Query: 8    LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
            L E M+     P    Y +++ G     + DEAY L E  K  G   +V+ Y+ ++   G
Sbjct: 644  LLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFG 703

Query: 188  RKGRVDEALRIIEE-MKKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
            + GR+DEA  I+EE M+K   PN  T+N L+D L +A +I+        M+     PN  
Sbjct: 704  KVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAM 763

Query: 365  TVNI 376
            T +I
Sbjct: 764  TYSI 767



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           LFE ++    VP   +Y+ +I G   AG   E YKL    KE+G    V+AYN ++    
Sbjct: 574 LFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFC 633

Query: 188 RKGRVDEALRIIEEMK-KDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNV 361
           + G+VD+A +++EEMK K  +P + TY  ++D L +  +++  Y   +  +  G+  NV
Sbjct: 634 KSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNV 692



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           L + M+ N        YN  I  +G  GK D A+K     K +G +P  + Y  ++  L 
Sbjct: 260 LLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLC 319

Query: 188 RKGRVDEALRIIEEMKKD-AEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           +  R+DEA+ + EE+  + + P +  YN +I     AGK +  Y   +  +R G  P+V 
Sbjct: 320 KARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVI 379

Query: 365 TVN 373
             N
Sbjct: 380 AYN 382



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           L+E M  + ++P    Y ++I  +   G+ ++ +K+ +    +GC P ++  N  + C+ 
Sbjct: 504 LYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVF 563

Query: 188 RKGRVDEALRIIEEMKKDA-EPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           + G V++   + EE+K     P++ +Y+ILI  L +AG     Y+    M+  GL  +V 
Sbjct: 564 KAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVL 623

Query: 365 TVN 373
             N
Sbjct: 624 AYN 626



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
 Frame = +2

Query: 50  YAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLGRKGRVDEALRIIEE 229
           + + T++  +   G+ D A  LL+  K       ++ YN  + C G+ G+VD A +   E
Sbjct: 239 HLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHE 298

Query: 230 MK-KDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVWTVN 373
           MK +   P+  TY  LI +LC+A +++   E  + ++     P V+  N
Sbjct: 299 MKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYN 347



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
 Frame = +2

Query: 5   DLFETMELNRRV---PCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCIL 175
           + F  +E+ R+    P   AY T+I    +A + D    L  + +E G   +V  +  ++
Sbjct: 186 EAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLV 245

Query: 176 TCLGRKGRVDEALRIIEEMKKDA-EPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLF 352
               R+GR+D AL +++EMK ++   +L  YN+ ID   + GK++  ++    M+  GL 
Sbjct: 246 RVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLV 305

Query: 353 PN 358
           P+
Sbjct: 306 PD 307



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
 Frame = +2

Query: 41  PCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLGRKGRVDEALRI 220
           P +  + ++I G G  G+ D+AY L E+  +   IP+V+ Y  ++    + GR ++  +I
Sbjct: 480 PDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKI 539

Query: 221 IEEM-KKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVWTVNI 376
            +EM  +   P+L   N  +D + +AG++E      + ++  GL P+V + +I
Sbjct: 540 YKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSI 592


>ref|XP_002314384.1| predicted protein [Populus trichocarpa] gi|222863424|gb|EEF00555.1|
           predicted protein [Populus trichocarpa]
          Length = 764

 Score =  204 bits (519), Expect = 6e-51
 Identities = 93/124 (75%), Positives = 110/124 (88%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           ++FE ME NR+VPCAYAYNTMIMGYGSAGKFDEAY LLERQ+ KGCIPSV+AYNCILTCL
Sbjct: 187 EIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCL 246

Query: 185 GRKGRVDEALRIIEEMKKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           G+KG+ D+ALRI EEMK+DA PNL TYNI+I MLC+AG +E+ ++ RDAM+ AGLFPNV 
Sbjct: 247 GKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVR 306

Query: 365 TVNI 376
           T+NI
Sbjct: 307 TINI 310



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
 Frame = +2

Query: 53  AYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLGRKGRVDEALRIIEEM 232
           AYNT+I G+  +GK ++AY+LLE  K  G  P+V+ Y  ++  L +  R+DEA  + EE 
Sbjct: 482 AYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEA 541

Query: 233 KKDA-EPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVWTVN 373
           K +  E N   Y+ LID   + G+++  Y   + M + GL PNV+T N
Sbjct: 542 KSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWN 589



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           LFE  + N        Y+++I G+G  G+ DEAY ++E   +KG  P+V  +NC+L  L 
Sbjct: 537 LFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLV 596

Query: 188 RKGRVDEALRIIEEMKK-DAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           +   ++EAL   + MK     PN  TY ILI+ LC+  K    +     M++ GL PN  
Sbjct: 597 KAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTI 656

Query: 365 T 367
           T
Sbjct: 657 T 657



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           L E M+     P    Y +++ G     + DEAY L E  K  G   + + Y+ ++   G
Sbjct: 502 LLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFG 561

Query: 188 RKGRVDEALRIIEE-MKKDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPN 358
           + GRVDEA  ++EE M+K   PN+ T+N L+D L +A +I        +M+     PN
Sbjct: 562 KVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPN 619



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           L + M+ N        YN  I  +G  GK D A+K     K  G +P  + Y  ++  L 
Sbjct: 118 LLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLC 177

Query: 188 RKGRVDEALRIIEEMKKDAE-PNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNVW 364
           +  R+DEA+ I E+M+++ + P    YN +I     AGK +  Y   +     G  P+V 
Sbjct: 178 KANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVV 237

Query: 365 TVN 373
             N
Sbjct: 238 AYN 240



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
 Frame = +2

Query: 5   DLFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCL 184
           DL + M   +  P   AY T+I      G+ D    L  + +E G   +V     ++   
Sbjct: 47  DLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVF 106

Query: 185 GRKGRVDEALRIIEEMKKDA-EPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPN 358
            R+GRVD AL +++EMK +  + ++  YN+ ID   + GK++  ++    M+  GL P+
Sbjct: 107 SREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPD 165



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
 Frame = +2

Query: 8   LFETMELNRRVPCAYAYNTMIMGYGSAGKFDEAYKLLERQKEKGCIPSVIAYNCILTCLG 187
           +FE M+ +  +P    YN +I     AG  + A+K+ +  KE G  P+V   N ++  L 
Sbjct: 258 IFEEMKRDA-MPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLC 316

Query: 188 RKGRVDEALRIIEEMK-KDAEPNLSTYNILIDMLCRAGKIESVYETRDAMERAGLFPNV 361
           +  ++DEA  I E M  K   P+ +T+  LID L + G+++  Y   + M  A   PNV
Sbjct: 317 KAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNV 375