BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035418
         (306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containi...   114   8e-24
emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]   107   1e-21
ref|XP_002321528.1| predicted protein [Populus trichocarpa] gi|2...   103   1e-20
ref|XP_002317698.1| predicted protein [Populus trichocarpa] gi|2...    95   5e-18
ref|XP_003598017.1| Pentatricopeptide repeat-containing protein ...    91   1e-16

>ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
           gi|449477575|ref|XP_004155061.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  114 bits (285), Expect = 8e-24
 Identities = 50/86 (58%), Positives = 66/86 (76%)
 Frame = -2

Query: 263 KQCSTITNLKQVHTQILKTGFDQNLYIIGKVVSLCALVLHDSMHYAVSVFKHIEKPDGFV 84
           KQCST+ +L Q+H  I++ GFDQNL++IGK++  CA+  H  M+YAV VF  IE  DGF+
Sbjct: 63  KQCSTLKDLNQLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDRIENADGFL 122

Query: 83  WNTMIRGFGKTSEPLKAFEYYKRMLD 6
           WNTMIRGFG+  + L AFE+YKRML+
Sbjct: 123 WNTMIRGFGRNRKLLMAFEFYKRMLE 148


>emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
          Length = 516

 Score =  107 bits (267), Expect = 1e-21
 Identities = 45/84 (53%), Positives = 65/84 (77%)
 Frame = -2

Query: 263 KQCSTITNLKQVHTQILKTGFDQNLYIIGKVVSLCALVLHDSMHYAVSVFKHIEKPDGFV 84
           KQC ++ +L+Q+H  +++TG +QNL+++GK++  CA+    SM YA+ VF  IE PDGF+
Sbjct: 59  KQCESMKHLEQLHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVFGKIENPDGFL 118

Query: 83  WNTMIRGFGKTSEPLKAFEYYKRM 12
           WNTMIRG G+T +P KAFE+YKRM
Sbjct: 119 WNTMIRGLGRTRQPEKAFEFYKRM 142


>ref|XP_002321528.1| predicted protein [Populus trichocarpa] gi|222868524|gb|EEF05655.1|
           predicted protein [Populus trichocarpa]
          Length = 450

 Score =  103 bits (257), Expect = 1e-20
 Identities = 43/77 (55%), Positives = 61/77 (79%)
 Frame = -2

Query: 242 NLKQVHTQILKTGFDQNLYIIGKVVSLCALVLHDSMHYAVSVFKHIEKPDGFVWNTMIRG 63
           +LKQ+H ++++ GF+QN +++GKV+  CA   H  M+YAVSVF+ I  PD F++NTMIRG
Sbjct: 3   DLKQIHARVIQLGFEQNRFVVGKVIVFCAAAEHGDMNYAVSVFEKIGDPDAFIFNTMIRG 62

Query: 62  FGKTSEPLKAFEYYKRM 12
           FGK ++P KAF+YYKRM
Sbjct: 63  FGKANDPRKAFDYYKRM 79


>ref|XP_002317698.1| predicted protein [Populus trichocarpa] gi|222858371|gb|EEE95918.1|
           predicted protein [Populus trichocarpa]
          Length = 300

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 40/76 (52%), Positives = 56/76 (73%)
 Frame = -2

Query: 239 LKQVHTQILKTGFDQNLYIIGKVVSLCALVLHDSMHYAVSVFKHIEKPDGFVWNTMIRGF 60
           L+Q+    ++ G++Q+L++ GK++  CA   H  M YAVSVF+  E PD F+WNTMIRGF
Sbjct: 4   LEQILAHAIQLGYEQSLFVAGKIIVFCAAAEHGDMSYAVSVFEKTENPDAFIWNTMIRGF 63

Query: 59  GKTSEPLKAFEYYKRM 12
           GKT++  KAFE+YKRM
Sbjct: 64  GKTNDAPKAFEFYKRM 79


>ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355487065|gb|AES68268.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 479

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
 Frame = -2

Query: 290 TNNTTYEQLKQCSTITNLKQVHTQILKTGFDQNLYIIGKVVSLCALVLHDSMHYAVSVFK 111
           T  T       CST+ +LKQ+H +I  TGF+ NL + GK++  CA  +  +M+YA++VF 
Sbjct: 11  TEQTLMNLFNHCSTLNHLKQIHARIFLTGFNHNLILSGKIIMFCA--VSQNMNYALNVFD 68

Query: 110 HIEKPDGFVWNTMIRGFG-KTSEPLKAFEYYKRM 12
            I KPD F+WNTMIRGFG  T+    A  ++KRM
Sbjct: 69  KIPKPDSFLWNTMIRGFGNSTTHSHNAIHFFKRM 102