BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035368
         (395 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat...    84   9e-15
ref|XP_002514843.1| pentatricopeptide repeat-containing protein,...    84   9e-15
ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat...    82   3e-14
ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containi...    80   1e-13
emb|CBI35203.3| unnamed protein product [Vitis vinifera]               80   1e-13

>ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 49/119 (41%), Positives = 74/119 (62%)
 Frame = -3

Query: 357 NTLILPEALELFDSLLHVKPSPPPIYPFNQLLGSISKLKHDQLILPLYKQMCFNTDVKKN 178
           N   + +AL LF+ +L ++P PP I  F++LL SI+++KH   +L LYKQM  +  +  N
Sbjct: 31  NVNTIDDALSLFNRMLRMRP-PPSIVDFSKLLTSITRMKHYSTVLSLYKQMD-SFGIPHN 88

Query: 177 IDVSTLTMLLSSFCQLSRVDLSFAVLGTIFKSGFEPVPRIFNCLIIGLFNENKCEEAME 1
               TL +L++SFC L+R+  +F+VLG I K G++P    F  LI GL  E K  EA++
Sbjct: 89  --TYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQ 145


>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 594

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
 Frame = -3

Query: 378 IKDRCKSNTLI-LPEALELFDSLLHVKPSPPPIYPFNQLLGSISKLKHDQLILPLYKQMC 202
           ++D+CK  +     +AL  F+ ++H+ P P  I  FNQLL ++ ++KH   ++ +Y++M 
Sbjct: 73  VRDKCKGGSFSNFDDALAYFNQMVHMNPFPC-ITQFNQLLAALVRMKHYDSVVSIYRKME 131

Query: 201 FNTDVKKNIDVSTLTMLLSSFCQLSRVDLSFAVLGTIFKSGFEPVPRIFNCLIIGLFNEN 22
           F      +  V TLT+L++  C L  V L F+VLG IFK GF+P    FN LI GL  E 
Sbjct: 132 F---FGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEG 188

Query: 21  KCEEAME 1
           +  EAME
Sbjct: 189 RIVEAME 195


>ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
 Frame = -3

Query: 387 SHYIKDRCKS-NTLILPEALELFDSLLHVKPSPPPIYPFNQLLGSISKLKHDQLILPLYK 211
           SH      KS N   + EAL  F+ +LH++P PP +  F ++L SI+ +KH   +L L K
Sbjct: 40  SHSSSFHSKSLNFNTIDEALSSFNRMLHMQP-PPSVVDFAKILTSIANMKHYSTVLSLSK 98

Query: 210 QMCFNTDVKKNIDVSTLTMLLSSFCQLSRVDLSFAVLGTIFKSGFEPVPRIFNCLIIGLF 31
           QM     +    DV TL ++++SFC L+RVD  F+VL  IFK G +P    F  LI GL 
Sbjct: 99  QM---DSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLC 155

Query: 30  NENKCEEAM 4
            E K  EA+
Sbjct: 156 VEGKIGEAL 164


>ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 48/115 (41%), Positives = 68/115 (59%)
 Frame = -3

Query: 345 LPEALELFDSLLHVKPSPPPIYPFNQLLGSISKLKHDQLILPLYKQMCFNTDVKKNIDVS 166
           L +AL  F  +LH+ P PPPI+ F +LL SI+K+KH   +L L K+M          DV 
Sbjct: 37  LDDALSSFHRMLHMHP-PPPIFEFAKLLTSIAKMKHYSTVLSLSKKM---DSFGIPPDVY 92

Query: 165 TLTMLLSSFCQLSRVDLSFAVLGTIFKSGFEPVPRIFNCLIIGLFNENKCEEAME 1
           TLT++++SFC L+RVD + +VL  I K G +P    F  L+ GL    K  EA++
Sbjct: 93  TLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALD 147


>emb|CBI35203.3| unnamed protein product [Vitis vinifera]
          Length = 394

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 48/115 (41%), Positives = 68/115 (59%)
 Frame = -3

Query: 345 LPEALELFDSLLHVKPSPPPIYPFNQLLGSISKLKHDQLILPLYKQMCFNTDVKKNIDVS 166
           L +AL  F  +LH+ P PPPI+ F +LL SI+K+KH   +L L K+M          DV 
Sbjct: 46  LDDALSSFHRMLHMHP-PPPIFEFAKLLTSIAKMKHYSTVLSLSKKM---DSFGIPPDVY 101

Query: 165 TLTMLLSSFCQLSRVDLSFAVLGTIFKSGFEPVPRIFNCLIIGLFNENKCEEAME 1
           TLT++++SFC L+RVD + +VL  I K G +P    F  L+ GL    K  EA++
Sbjct: 102 TLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALD 156