BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035344
         (363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containi...    62   5e-08
emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]    62   5e-08
emb|CBI18522.3| unnamed protein product [Vitis vinifera]               59   3e-07
ref|XP_002518234.1| pentatricopeptide repeat-containing protein,...    57   2e-06

>ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
            mitochondrial-like [Vitis vinifera]
          Length = 993

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
 Frame = -3

Query: 361  EKETESLASILISLCEQGNIEQATSIIGEVGSVAFSSKKRYSASTSLKKHSAL------- 203
            E ETES+ S +ISLCEQG+I++A +++ EVGS+ F   +R       +K   +       
Sbjct: 856  EIETESVESFIISLCEQGSIQEAVTVLNEVGSIFFPIGRRCRPQNRAEKEEKIYEGVTFG 915

Query: 202  SMFTRNSLYAYMGSPGMRFPDLLKMRSSFEESDCFSIQPIPLDFSACYSLVSSLCSEGKL 23
            ++ +++S   +     +   ++ K+    ++ D         DF + YSL++SLCS G+L
Sbjct: 916  AVSSKHSSLNHKMDLDVGLSNVKKVEMVVDDYDNSEKGSRVPDFESYYSLIASLCSRGEL 975

Query: 22   DKAN 11
             +AN
Sbjct: 976  LEAN 979


>emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
          Length = 993

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
 Frame = -3

Query: 361  EKETESLASILISLCEQGNIEQATSIIGEVGSVAFSSKKRYSASTSLKKHSAL------- 203
            E ETES+ S +ISLCEQG+I++A +++ EVGS+ F   +R       +K   +       
Sbjct: 856  EIETESVESFIISLCEQGSIQEAVTVLNEVGSIFFPIGRRCRPQNRAEKEEKIYEGVTFG 915

Query: 202  SMFTRNSLYAYMGSPGMRFPDLLKMRSSFEESDCFSIQPIPLDFSACYSLVSSLCSEGKL 23
            ++ +++S   +     +   ++ K+    ++ D         DF + YSL++SLCS G+L
Sbjct: 916  AVSSKHSSLNHKMDLDVGLSNVKKVEMVVDDYDNSEKGSRVPDFESYYSLIASLCSRGEL 975

Query: 22   DKAN 11
             +AN
Sbjct: 976  LEAN 979


>emb|CBI18522.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 40/117 (34%), Positives = 57/117 (48%)
 Frame = -3

Query: 361 EKETESLASILISLCEQGNIEQATSIIGEVGSVAFSSKKRYSASTSLKKHSALSMFTRNS 182
           E ETES+ S +ISLCEQG+I++A +++ EVGS+ F   +R       +K   +       
Sbjct: 711 EIETESVESFIISLCEQGSIQEAVTVLNEVGSIFFPIGRRCRPQNRAEKEEKI------- 763

Query: 181 LYAYMGSPGMRFPDLLKMRSSFEESDCFSIQPIPLDFSACYSLVSSLCSEGKLDKAN 11
              Y G  G R P                      DF + YSL++SLCS G+L +AN
Sbjct: 764 ---YEGK-GSRVP----------------------DFESYYSLIASLCSRGELLEAN 794


>ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223542581|gb|EEF44120.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 932

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 38/117 (32%), Positives = 62/117 (52%)
 Frame = -3

Query: 361  EKETESLASILISLCEQGNIEQATSIIGEVGSVAFSSKKRYSASTSLKKHSALSMFTRNS 182
            E ETES+ S L+ LCE+G+I++A +++ E+GS+ F  +K  S S S    SA        
Sbjct: 817  EVETESIESFLLFLCEKGSIKEAVAVLNEIGSLFFPVQKWSSPSESQSLQSA-------- 868

Query: 181  LYAYMGSPGMRFPDLLKMRSSFEESDCFSIQPIPLDFSACYSLVSSLCSEGKLDKAN 11
                  +  +   D  ++    E SD          F++ YS+++SLCS+G+L +AN
Sbjct: 869  ------NLSLASCDATEVDEVVETSDDLGESKFNC-FASYYSVIASLCSKGELGEAN 918