BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035330
         (827 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAS07216.1| putative retrotransposon gag protein [Oryza sativ...   116   5e-24
gb|AAP21433.1| putative polyprotein [Oryza sativa Japonica Group...   116   5e-24
gb|ABA94114.1| retrotransposon protein, putative, Ty3-gypsy subc...   116   7e-24
gb|ABA93973.1| retrotransposon protein, putative, Ty3-gypsy subc...   116   7e-24
gb|AAS90666.1| putative polyprotein [Oryza sativa Japonica Group...   116   7e-24

>gb|AAS07216.1| putative retrotransposon gag protein [Oryza sativa Japonica Group]
          Length = 660

 Score =  116 bits (291), Expect = 5e-24
 Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 13/217 (5%)
 Frame = +2

Query: 134 AMMTQLLQAV--------QNNHGNQNDPFAKRNK----DFANLGGKRFTGTLGPLAAEAW 277
           A+ TQ+LQ +         N HGN + P    N+    DF       F+ T+ P+ A+ W
Sbjct: 104 AVQTQILQGLAAAVAGFQHNAHGNGH-PHMSNNRSKLTDFLRSRPPEFSQTIEPVEADDW 162

Query: 278 LKACEMIFKRMDLTEVQKQELAAHQLDDAAQFWWMSIL-PHVDADTMSWTEFQEKFEARF 454
           LK  +     +  T V+K   A+HQL   A  WW +    H +   ++W EF   F A  
Sbjct: 163 LKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWENYCNAHPEPTNIAWDEFATAFRAAH 222

Query: 455 IPHALREQKAEEFQQLKQTGSMTVEQYVTKFNELSRFATYLVDTPEKKNRKFIKGLNPYL 634
           +P +  + K EEF +LKQ G+ +V +Y++ FN+L+R+A   VDT +KK RKF+KG+   +
Sbjct: 223 VPESTIDMKKEEFNRLKQ-GNSSVNEYLSMFNKLARYAPEEVDTDKKKIRKFLKGIAVGM 281

Query: 635 SRSLLPFGKDTFDRVLDLALMYEEQNKEFRESRDKGK 745
              LL     TF  +++ AL+ E+  KE  E   K K
Sbjct: 282 RLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRK 318


>gb|AAP21433.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108711644|gb|ABF99439.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1382

 Score =  116 bits (291), Expect = 5e-24
 Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 13/217 (5%)
 Frame = +2

Query: 134 AMMTQLLQAV--------QNNHGNQNDPFAKRNK----DFANLGGKRFTGTLGPLAAEAW 277
           A+ TQ+LQ +         N HGN + P    N+    DF       F+ T+ P+ A+ W
Sbjct: 104 AVQTQILQGLAAAVAGFQHNAHGNGH-PHMSNNRSKLTDFLRSRPPEFSQTIEPVEADDW 162

Query: 278 LKACEMIFKRMDLTEVQKQELAAHQLDDAAQFWWMSIL-PHVDADTMSWTEFQEKFEARF 454
           LK  +     +  T V+K   A+HQL   A  WW +    H +   ++W EF   F A  
Sbjct: 163 LKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWENYCNAHPEPTNIAWDEFATAFRAAH 222

Query: 455 IPHALREQKAEEFQQLKQTGSMTVEQYVTKFNELSRFATYLVDTPEKKNRKFIKGLNPYL 634
           +P +  + K EEF +LKQ G+ +V +Y++ FN+L+R+A   VDT +KK RKF+KG+   +
Sbjct: 223 VPESTIDMKKEEFNRLKQ-GNSSVNEYLSMFNKLARYAPEEVDTDKKKIRKFLKGIAVGM 281

Query: 635 SRSLLPFGKDTFDRVLDLALMYEEQNKEFRESRDKGK 745
              LL     TF  +++ AL+ E+  KE  E   K K
Sbjct: 282 RLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRK 318


>gb|ABA94114.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 622

 Score =  116 bits (290), Expect = 7e-24
 Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 12/215 (5%)
 Frame = +2

Query: 134  AMMTQLLQAV--------QNNHGNQNDPFAKRNKDFANLGGKR---FTGTLGPLAAEAWL 280
            A+ TQ+LQ +         N HGN +   +       N    R   F+ T+ P+ A+ WL
Sbjct: 398  AVQTQILQGLAAAVAGYQHNAHGNGHPHMSNNRSKLTNFLRSRPPEFSQTVEPVEADDWL 457

Query: 281  KACEMIFKRMDLTEVQKQELAAHQLDDAAQFWWMSIL-PHVDADTMSWTEFQEKFEARFI 457
            K  +     +  T V+K   A+HQL   A  WW +    H +   ++W EF   F A  +
Sbjct: 458  KDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWENYCNAHPEPTNIAWDEFATAFRAAHV 517

Query: 458  PHALREQKAEEFQQLKQTGSMTVEQYVTKFNELSRFATYLVDTPEKKNRKFIKGLNPYLS 637
            P +  + K EEF +LKQ G+ +V +Y++ FN+L+R+A   VDT +KK RKF+KG+   + 
Sbjct: 518  PESTIDMKKEEFNRLKQ-GNSSVNEYLSMFNKLARYAPEEVDTDKKKIRKFLKGIAVGMR 576

Query: 638  RSLLPFGKDTFDRVLDLALMYEEQNKEFRESRDKG 742
              LL     TF  +++ AL+ E+  KE  E  ++G
Sbjct: 577  LQLLAHDFPTFQHMINKALLLEDARKEATEVTERG 611


>gb|ABA93973.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 714

 Score =  116 bits (290), Expect = 7e-24
 Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 13/217 (5%)
 Frame = +2

Query: 134 AMMTQLLQAV--------QNNHGNQNDPFAKRNK----DFANLGGKRFTGTLGPLAAEAW 277
           A+ TQ+LQ +         N HGN + P    N+    DF       F+ T+ P+ A+ W
Sbjct: 104 AVQTQILQGLAAAVAGFQHNAHGNGH-PHRSNNRSKLTDFLRSRPPEFSQTVEPVEADDW 162

Query: 278 LKACEMIFKRMDLTEVQKQELAAHQLDDAAQFWWMSIL-PHVDADTMSWTEFQEKFEARF 454
           LK  +     +  T V+K   A+HQL   A  WW +    H +   ++W EF   F A  
Sbjct: 163 LKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWENYCNAHPEPTNIAWDEFATAFRAAH 222

Query: 455 IPHALREQKAEEFQQLKQTGSMTVEQYVTKFNELSRFATYLVDTPEKKNRKFIKGLNPYL 634
           +P +  + K EEF +LKQ G+ +V +Y++ FN+L+R+A   VDT +KK RKF+KG+   +
Sbjct: 223 VPESTIDMKKEEFNRLKQ-GNSSVNEYLSMFNKLARYAPEEVDTDKKKIRKFLKGIAVGM 281

Query: 635 SRSLLPFGKDTFDRVLDLALMYEEQNKEFRESRDKGK 745
              LL     TF  +++ AL+ E+  KE  E   K K
Sbjct: 282 RLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRK 318


>gb|AAS90666.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|55733908|gb|AAV59415.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1649

 Score =  116 bits (290), Expect = 7e-24
 Identities = 74/217 (34%), Positives = 113/217 (52%), Gaps = 13/217 (5%)
 Frame = +2

Query: 134 AMMTQLLQAV--------QNNHGNQNDPFAKRNK----DFANLGGKRFTGTLGPLAAEAW 277
           A+ TQ+LQ +         N HGN + P    N+    DF       F+ T+ P+ A+ W
Sbjct: 251 AVQTQILQGLTTAIASFQHNAHGNGH-PHMGNNRSKLTDFLRSRPPEFSQTVEPVEADDW 309

Query: 278 LKACEMIFKRMDLTEVQKQELAAHQLDDAAQFWWMSIL-PHVDADTMSWTEFQEKFEARF 454
           LK  +     +  T V+K   A+HQL   A  WW +    H +   ++W EF   F A  
Sbjct: 310 LKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWENYCNAHPEPTNIAWDEFATAFRAAH 369

Query: 455 IPHALREQKAEEFQQLKQTGSMTVEQYVTKFNELSRFATYLVDTPEKKNRKFIKGLNPYL 634
           +P +  + K EEF +LKQ G+ +V +Y+++FN+L+R+A   VDT +KK RKF+KG+   +
Sbjct: 370 VPESTIDMKKEEFNRLKQ-GNSSVNEYLSQFNKLARYAPEEVDTDKKKIRKFLKGIAVGM 428

Query: 635 SRSLLPFGKDTFDRVLDLALMYEEQNKEFRESRDKGK 745
              LL     TF  +++ AL+ E+  KE  E   K K
Sbjct: 429 RLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRK 465