BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035138
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat...   228   3e-58
ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat...   224   4e-57
emb|CBI29893.3| unnamed protein product [Vitis vinifera]              224   4e-57
ref|XP_002322694.1| predicted protein [Populus trichocarpa] gi|2...   221   5e-56
ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago t...   219   2e-55

>ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  228 bits (582), Expect = 3e-58
 Identities = 111/135 (82%), Positives = 124/135 (91%)
 Frame = +2

Query: 2   IHEARGVFESLPERDVVSCTAIISGYAQLGLDEEALEMFCQLLRQGMDSNYVTYASVLTA 181
           IHEARG+F+ LPERDVVSCTAIISGYAQLGLDEEALE+F +L R+GM SNYVTY SVLTA
Sbjct: 210 IHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTA 269

Query: 182 LSGLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGSLTYSRRIFDGMLERTVITW 361
           LSGLAALDHG+QVHN LLRS++P+YVVL NSLIDMYSKCG+LTY+RRIFD + ERTVI+W
Sbjct: 270 LSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISW 329

Query: 362 NAMLVGYGKHGLGRE 406
           NAMLVGY KHG GRE
Sbjct: 330 NAMLVGYSKHGEGRE 344



 Score =  109 bits (273), Expect = 2e-22
 Identities = 55/135 (40%), Positives = 88/135 (65%)
 Frame = +2

Query: 2   IHEARGVFESLPERDVVSCTAIISGYAQLGLDEEALEMFCQLLRQGMDSNYVTYASVLTA 181
           + +AR VF+ +PER+VVS TA+IS Y+Q G   +AL +F Q+LR G + N  T+A+VLT+
Sbjct: 109 LRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTS 168

Query: 182 LSGLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGSLTYSRRIFDGMLERTVITW 361
             G +    GRQ+H+ +++     +V + +SL+DMY+K G +  +R IF  + ER V++ 
Sbjct: 169 CIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSC 228

Query: 362 NAMLVGYGKHGLGRE 406
            A++ GY + GL  E
Sbjct: 229 TAIISGYAQLGLDEE 243



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 33/100 (33%), Positives = 52/100 (52%)
 Frame = +2

Query: 95  DEEALEMFCQLLRQGMDSNYVTYASVLTALSGLAALDHGRQVHNRLLRSQLPNYVVLNNS 274
           D    E    +  +G+D+N+  Y +VL       A+  G++VH  ++++     V L   
Sbjct: 39  DTRLREALLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTR 98

Query: 275 LIDMYSKCGSLTYSRRIFDGMLERTVITWNAMLVGYGKHG 394
           LI  Y KC SL  +R +FD M ER V++W AM+  Y + G
Sbjct: 99  LIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRG 138


>ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  224 bits (572), Expect = 4e-57
 Identities = 113/135 (83%), Positives = 123/135 (91%)
 Frame = +2

Query: 2    IHEARGVFESLPERDVVSCTAIISGYAQLGLDEEALEMFCQLLRQGMDSNYVTYASVLTA 181
            I EAR VF+ LPERDVVSCTAIISGYAQLGLDEEAL++F +L R+GM SNYVTYASVLTA
Sbjct: 629  ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTA 688

Query: 182  LSGLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGSLTYSRRIFDGMLERTVITW 361
            LSGLAALDHGRQVH+ +LR++LP YVVL NSLIDMYSKCGSLTYSRRIFD M ERTVI+W
Sbjct: 689  LSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISW 748

Query: 362  NAMLVGYGKHGLGRE 406
            NAMLVGY KHGLGRE
Sbjct: 749  NAMLVGYSKHGLGRE 763



 Score =  116 bits (291), Expect = 2e-24
 Identities = 54/133 (40%), Positives = 90/133 (67%)
 Frame = +2

Query: 8   EARGVFESLPERDVVSCTAIISGYAQLGLDEEALEMFCQLLRQGMDSNYVTYASVLTALS 187
           +AR V + +PER+VVS TA+ISGY+Q G   EAL +F ++L  G   N  T+A+VLT+ +
Sbjct: 530 DARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCT 589

Query: 188 GLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGSLTYSRRIFDGMLERTVITWNA 367
             +    GRQ+H+ ++++   +++ + +SL+DMY+K G +  +RR+FDG+ ER V++  A
Sbjct: 590 SSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTA 649

Query: 368 MLVGYGKHGLGRE 406
           ++ GY + GL  E
Sbjct: 650 IISGYAQLGLDEE 662



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 38/105 (36%), Positives = 56/105 (53%)
 Frame = +2

Query: 92  LDEEALEMFCQLLRQGMDSNYVTYASVLTALSGLAALDHGRQVHNRLLRSQLPNYVVLNN 271
           L E  LEM  Q    G++  +  Y SVLT      A+  G++VH  ++++     V L  
Sbjct: 461 LKEALLEMGIQ----GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRT 516

Query: 272 SLIDMYSKCGSLTYSRRIFDGMLERTVITWNAMLVGYGKHGLGRE 406
            LI +Y+KC  L  +RR+ D M ER V++W AM+ GY + G   E
Sbjct: 517 RLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASE 561


>emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  224 bits (572), Expect = 4e-57
 Identities = 113/135 (83%), Positives = 123/135 (91%)
 Frame = +2

Query: 2   IHEARGVFESLPERDVVSCTAIISGYAQLGLDEEALEMFCQLLRQGMDSNYVTYASVLTA 181
           I EAR VF+ LPERDVVSCTAIISGYAQLGLDEEAL++F +L R+GM SNYVTYASVLTA
Sbjct: 162 ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTA 221

Query: 182 LSGLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGSLTYSRRIFDGMLERTVITW 361
           LSGLAALDHGRQVH+ +LR++LP YVVL NSLIDMYSKCGSLTYSRRIFD M ERTVI+W
Sbjct: 222 LSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISW 281

Query: 362 NAMLVGYGKHGLGRE 406
           NAMLVGY KHGLGRE
Sbjct: 282 NAMLVGYSKHGLGRE 296



 Score =  116 bits (291), Expect = 2e-24
 Identities = 54/133 (40%), Positives = 90/133 (67%)
 Frame = +2

Query: 8   EARGVFESLPERDVVSCTAIISGYAQLGLDEEALEMFCQLLRQGMDSNYVTYASVLTALS 187
           +AR V + +PER+VVS TA+ISGY+Q G   EAL +F ++L  G   N  T+A+VLT+ +
Sbjct: 63  DARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCT 122

Query: 188 GLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGSLTYSRRIFDGMLERTVITWNA 367
             +    GRQ+H+ ++++   +++ + +SL+DMY+K G +  +RR+FDG+ ER V++  A
Sbjct: 123 SSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTA 182

Query: 368 MLVGYGKHGLGRE 406
           ++ GY + GL  E
Sbjct: 183 IISGYAQLGLDEE 195



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/91 (36%), Positives = 51/91 (56%)
 Frame = +2

Query: 134 QGMDSNYVTYASVLTALSGLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGSLTY 313
           QG++  +  Y SVLT      A+  G++VH  ++++     V L   LI +Y+KC  L  
Sbjct: 4   QGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGD 63

Query: 314 SRRIFDGMLERTVITWNAMLVGYGKHGLGRE 406
           +RR+ D M ER V++W AM+ GY + G   E
Sbjct: 64  ARRVLDEMPERNVVSWTAMISGYSQRGYASE 94


>ref|XP_002322694.1| predicted protein [Populus trichocarpa] gi|222867324|gb|EEF04455.1|
           predicted protein [Populus trichocarpa]
          Length = 586

 Score =  221 bits (563), Expect = 5e-56
 Identities = 108/135 (80%), Positives = 121/135 (89%)
 Frame = +2

Query: 2   IHEARGVFESLPERDVVSCTAIISGYAQLGLDEEALEMFCQLLRQGMDSNYVTYASVLTA 181
           IHEARGVFE LPERDVVSCTAIISGYAQLGLDEEALE+FC+L R+GM SNYVTYAS+LTA
Sbjct: 162 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTA 221

Query: 182 LSGLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGSLTYSRRIFDGMLERTVITW 361
           LSGLAALDHG+QVH+ +LR +LP YVVL NSLIDMYSKCG+L Y+R+IF+ M  RTVI+W
Sbjct: 222 LSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISW 281

Query: 362 NAMLVGYGKHGLGRE 406
           NAMLVGY KHG G E
Sbjct: 282 NAMLVGYSKHGKGIE 296



 Score =  112 bits (280), Expect = 3e-23
 Identities = 53/132 (40%), Positives = 88/132 (66%)
 Frame = +2

Query: 11  ARGVFESLPERDVVSCTAIISGYAQLGLDEEALEMFCQLLRQGMDSNYVTYASVLTALSG 190
           AR VF+ + ER+VVS TA+ISGY+Q G   EAL +F Q+LR   + N  T+A+VL++ +G
Sbjct: 64  ARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTG 123

Query: 191 LAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGSLTYSRRIFDGMLERTVITWNAM 370
            +  + GRQ+H+ + +    N++ + +SL+DMY+K G +  +R +F+ + ER V++  A+
Sbjct: 124 FSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 183

Query: 371 LVGYGKHGLGRE 406
           + GY + GL  E
Sbjct: 184 ISGYAQLGLDEE 195



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/91 (32%), Positives = 49/91 (53%)
 Frame = +2

Query: 134 QGMDSNYVTYASVLTALSGLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGSLTY 313
           QG +  +  Y  +L       A+  G++VH  ++++     V L+  LI +Y+KC  L  
Sbjct: 4   QGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGC 63

Query: 314 SRRIFDGMLERTVITWNAMLVGYGKHGLGRE 406
           +R +FD M ER V++W AM+ GY + G   E
Sbjct: 64  ARHVFDEMRERNVVSWTAMISGYSQRGFASE 94


>ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355479421|gb|AES60624.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 840

 Score =  219 bits (557), Expect = 2e-55
 Identities = 109/135 (80%), Positives = 120/135 (88%)
 Frame = +2

Query: 2   IHEARGVFESLPERDVVSCTAIISGYAQLGLDEEALEMFCQLLRQGMDSNYVTYASVLTA 181
           IHEAR VFE LPERDVVSCTAIISGYAQLGLDEEALE+F +L  +GM SNYVTY  VLTA
Sbjct: 416 IHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTA 475

Query: 182 LSGLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGSLTYSRRIFDGMLERTVITW 361
           LSGLAALD G+QVHN +LRS++P++VVL NSLIDMYSKCG+LTYSRRIFD M ERTVI+W
Sbjct: 476 LSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISW 535

Query: 362 NAMLVGYGKHGLGRE 406
           NAMLVGY KHG GRE
Sbjct: 536 NAMLVGYSKHGEGRE 550



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 48/154 (31%), Positives = 85/154 (55%), Gaps = 21/154 (13%)
 Frame = +2

Query: 8   EARGVFESLPERDVVSCTAIISGYAQLGLDEEALEMFCQLLRQGM--------------- 142
           +A  VF+ +PER+VVS TA+IS Y+Q G   +AL +F   ++  +               
Sbjct: 296 DAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPN 355

Query: 143 ------DSNYVTYASVLTALSGLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCGS 304
                 + N  T+A+VLT+ +       GRQ+H+ +++    ++V + +SL+DMY+K G 
Sbjct: 356 RPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGK 415

Query: 305 LTYSRRIFDGMLERTVITWNAMLVGYGKHGLGRE 406
           +  +R +F+ + ER V++  A++ GY + GL  E
Sbjct: 416 IHEARTVFECLPERDVVSCTAIISGYAQLGLDEE 449



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 28/91 (30%), Positives = 48/91 (52%)
 Frame = +2

Query: 122 QLLRQGMDSNYVTYASVLTALSGLAALDHGRQVHNRLLRSQLPNYVVLNNSLIDMYSKCG 301
           Q+   G +  +  Y ++L       A   G++VH  +++++    V L   LI +Y+KC 
Sbjct: 233 QMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCD 292

Query: 302 SLTYSRRIFDGMLERTVITWNAMLVGYGKHG 394
           SL  +  +FD M ER V++W AM+  Y + G
Sbjct: 293 SLGDAHNVFDEMPERNVVSWTAMISAYSQRG 323