BLASTX nr result

ID: Coptis21_contig00035101 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035101
         (748 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003621967.1| Heat shock protein [Medicago truncatula] gi|...    61   2e-07
gb|ABN09155.1| Polynucleotidyl transferase, Ribonuclease H fold ...    56   7e-06

>ref|XP_003621967.1| Heat shock protein [Medicago truncatula]
           gi|357503391|ref|XP_003621984.1| Heat shock protein
           [Medicago truncatula] gi|355496982|gb|AES78185.1| Heat
           shock protein [Medicago truncatula]
           gi|355496999|gb|AES78202.1| Heat shock protein [Medicago
           truncatula]
          Length = 553

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
 Frame = +3

Query: 240 KCLAILDGVEIVISRGWLTLWVEMDSEAASKAFTSGN-VPWQLQARWTNCTTAIHQLE-- 410
           K + ++  VE  I R W  LW+E DS+ A+ A  S N VPWQL+ RW NC   +  +   
Sbjct: 344 KLMGVILAVECAIDRNWNNLWIESDSKLANLAVKSPNIVPWQLKNRWLNCVHLMSNMNCM 403

Query: 411 ITTIFREGN 437
           IT I+REGN
Sbjct: 404 ITHIYREGN 412


>gb|ABN09155.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 99

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
 Frame = +3

Query: 264 VEIVISRGWLTLWVEMDSEAASKAFTSGN-VPWQLQARWTNCTTAIHQLE--ITTIFREG 434
           +EI   RG+  LW+E DS+ A  AF S N +PW+++ RW NC   I  +   IT I+REG
Sbjct: 4   IEIAKQRGYSRLWIETDSKLAVLAFKSSNLIPWKIRNRWDNCMEYISNIAFLITHIYREG 63

Query: 435 N 437
           N
Sbjct: 64  N 64


Top