BLASTX nr result
ID: Coptis21_contig00035091
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00035091 (487 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|2... 113 2e-23 ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago t... 107 1e-21 ref|XP_002517091.1| pentatricopeptide repeat-containing protein,... 104 9e-21 ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containi... 94 1e-17 ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi... 89 5e-16 >ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa] Length = 606 Score = 113 bits (282), Expect = 2e-23 Identities = 68/165 (41%), Positives = 95/165 (57%), Gaps = 21/165 (12%) Frame = +2 Query: 35 MSHFKQIQAIIIRTCLIPHT--------------------TNLLNITSQN-NLYIYNTII 151 M KQIQA + +T LI HT +LL QN N YI+NT+I Sbjct: 63 MLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQLQNPNTYIWNTMI 122 Query: 152 KHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIKACELFKGGVIVNGEIHCRVCKLGF 331 + YSK+K + F +M++K +EM+ ++FVF +KACE F G V+ +HC V K+GF Sbjct: 123 RGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLG-VLEGKSVHCVVWKMGF 181 Query: 332 DSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFSWTTIIDCY 466 L+++N L+HFYG G L A L+FDE +DV SWT++ID Y Sbjct: 182 VYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGY 226 >ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula] Length = 1024 Score = 107 bits (266), Expect = 1e-21 Identities = 55/141 (39%), Positives = 88/141 (62%), Gaps = 7/141 (4%) Frame = +2 Query: 65 IIRTCLIPHTTNL------LNITSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLE 226 +I C + H+ +L N Q N +++NT+I+ Y +++P + F M + +E Sbjct: 195 VIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVE 254 Query: 227 MNKQTFVFTIKACELFKGGVIVNGE-IHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAE 403 M+ ++FVF +KAC+ F+ + GE ++C V K+GFD EL++RN L+HFY + G L +A Sbjct: 255 MDSRSFVFALKACQQFE--TVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNAR 312 Query: 404 LLFDESVVKDVFSWTTIIDCY 466 +FDES KDV +WTT+ID Y Sbjct: 313 QVFDESSDKDVVTWTTMIDGY 333 Score = 61.2 bits (147), Expect = 8e-08 Identities = 35/131 (26%), Positives = 65/131 (49%) Frame = +2 Query: 80 LIPHTTNLLNITSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIK 259 L+ + + + +S ++ + T+I Y+ + ++ +F ML H+E N+ T + + Sbjct: 307 LLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVS 366 Query: 260 ACELFKGGVIVNGEIHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVF 439 AC G + + +H +V + L L N L+ Y K L A LFD KDV+ Sbjct: 367 ACSDM-GNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVY 425 Query: 440 SWTTIIDCYVQ 472 SWT++++ Y + Sbjct: 426 SWTSMVNGYAK 436 >ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 606 Score = 104 bits (259), Expect = 9e-21 Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 22/166 (13%) Frame = +2 Query: 35 MSHFKQIQAIIIRTCLIPHTTN---------------------LLNITSQNNLYIYNTII 151 M KQIQA +I T LI HT L N N YI+NT+I Sbjct: 171 MIQLKQIQAHMIITGLITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYIWNTMI 230 Query: 152 KHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIKACELFKGGVIVNGE-IHCRVCKLG 328 + +S +K P + + F +M+R+ +EM+ ++FVF +KA E F + GE IHC + K+G Sbjct: 231 RGFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFALKASEQFL--TALEGESIHCAIWKIG 288 Query: 329 FDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFSWTTIIDCY 466 F L+++N L+HFY +G L A +FDE+ +DV SWT++ID Y Sbjct: 289 FPCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGY 334 Score = 57.8 bits (138), Expect = 9e-07 Identities = 35/120 (29%), Positives = 60/120 (50%) Frame = +2 Query: 113 TSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIKACELFKGGVIV 292 T ++ + ++I YS ++ LF ML +E N+ T + + AC KG + + Sbjct: 319 TPARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACSQ-KGDLSL 377 Query: 293 NGEIHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFSWTTIIDCYVQ 472 IH V + + + L N ++ Y K G L +A +FD KDVFSWT++++ Y + Sbjct: 378 GKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAAREIFDSMGTKDVFSWTSMVNGYAK 437 >ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucumis sativus] Length = 675 Score = 94.0 bits (232), Expect = 1e-17 Identities = 49/122 (40%), Positives = 72/122 (59%) Frame = +2 Query: 113 TSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIKACELFKGGVIV 292 T N + +NT+IK Y K+ P + FR+M+R E + +FVF +KAC F IV Sbjct: 112 TELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQF-AEKIV 170 Query: 293 NGEIHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFSWTTIIDCYVQ 472 +H + K GFDS+L ++N L+ Y + G L A +FDES VKDV +WTT+I+ Y + Sbjct: 171 GMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYAR 230 Query: 473 KS 478 + Sbjct: 231 NN 232 Score = 58.5 bits (140), Expect = 5e-07 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Frame = +2 Query: 119 QNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRK-HLEMNKQTFVFTIKACELFKGGVIVN 295 + N+ +N +I YS++ QP ++ LF M+ L + T V + A G + + Sbjct: 347 ERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQL-GCLEMG 405 Query: 296 GEIHCR-VCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFSWTTIIDCY 466 EIHC V K+G L+L+N +M Y K G + +A LF K++ SW ++I Y Sbjct: 406 QEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAY 463 Score = 57.4 bits (137), Expect = 1e-06 Identities = 33/135 (24%), Positives = 67/135 (49%) Frame = +2 Query: 68 IRTCLIPHTTNLLNITSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLEMNKQTFV 247 + T + + + +S ++ + T+I Y+++ +I LF ML ++ N+ T + Sbjct: 198 VETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMI 257 Query: 248 FTIKACELFKGGVIVNGEIHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVV 427 + AC KG + +H + + L L N ++ Y K G L++A +F+ Sbjct: 258 ALLSACSQ-KGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMER 316 Query: 428 KDVFSWTTIIDCYVQ 472 +DVFSWT++++ Y + Sbjct: 317 RDVFSWTSLLNGYAK 331 >ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Vitis vinifera] Length = 536 Score = 88.6 bits (218), Expect = 5e-16 Identities = 42/133 (31%), Positives = 72/133 (54%) Frame = +2 Query: 83 IPHTTNLLNITSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIKA 262 IP+ ++ + N Y++NTII+ Y+ S P+ ++ +F +ML + +K TF F +K+ Sbjct: 58 IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKS 117 Query: 263 CELFKGGVIVNGEIHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFS 442 C F GV +IH V K G +L ++N L+H Y G + A L D + +DV S Sbjct: 118 CGSF-SGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVS 176 Query: 443 WTTIIDCYVQKSI 481 W ++ Y ++ + Sbjct: 177 WNALLSAYAERGL 189