BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035091
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|2...   113   2e-23
ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago t...   107   1e-21
ref|XP_002517091.1| pentatricopeptide repeat-containing protein,...   104   9e-21
ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-17
ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi...    89   5e-16

>ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|222873565|gb|EEF10696.1|
           predicted protein [Populus trichocarpa]
          Length = 606

 Score =  113 bits (282), Expect = 2e-23
 Identities = 68/165 (41%), Positives = 95/165 (57%), Gaps = 21/165 (12%)
 Frame = +2

Query: 35  MSHFKQIQAIIIRTCLIPHT--------------------TNLLNITSQN-NLYIYNTII 151
           M   KQIQA + +T LI HT                     +LL    QN N YI+NT+I
Sbjct: 63  MLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQLQNPNTYIWNTMI 122

Query: 152 KHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIKACELFKGGVIVNGEIHCRVCKLGF 331
           + YSK+K  +     F +M++K +EM+ ++FVF +KACE F G V+    +HC V K+GF
Sbjct: 123 RGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLG-VLEGKSVHCVVWKMGF 181

Query: 332 DSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFSWTTIIDCY 466
              L+++N L+HFYG  G L  A L+FDE   +DV SWT++ID Y
Sbjct: 182 VYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGY 226


>ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355500337|gb|AES81540.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 1024

 Score =  107 bits (266), Expect = 1e-21
 Identities = 55/141 (39%), Positives = 88/141 (62%), Gaps = 7/141 (4%)
 Frame = +2

Query: 65  IIRTCLIPHTTNL------LNITSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLE 226
           +I  C + H+ +L       N   Q N +++NT+I+ Y  +++P  +   F  M +  +E
Sbjct: 195 VIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVE 254

Query: 227 MNKQTFVFTIKACELFKGGVIVNGE-IHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAE 403
           M+ ++FVF +KAC+ F+   +  GE ++C V K+GFD EL++RN L+HFY + G L +A 
Sbjct: 255 MDSRSFVFALKACQQFE--TVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNAR 312

Query: 404 LLFDESVVKDVFSWTTIIDCY 466
            +FDES  KDV +WTT+ID Y
Sbjct: 313 QVFDESSDKDVVTWTTMIDGY 333



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 35/131 (26%), Positives = 65/131 (49%)
 Frame = +2

Query: 80  LIPHTTNLLNITSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIK 259
           L+ +   + + +S  ++  + T+I  Y+     + ++ +F  ML  H+E N+ T +  + 
Sbjct: 307 LLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVS 366

Query: 260 ACELFKGGVIVNGEIHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVF 439
           AC    G + +   +H +V +      L L N L+  Y K   L  A  LFD    KDV+
Sbjct: 367 ACSDM-GNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVY 425

Query: 440 SWTTIIDCYVQ 472
           SWT++++ Y +
Sbjct: 426 SWTSMVNGYAK 436


>ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543726|gb|EEF45254.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 606

 Score =  104 bits (259), Expect = 9e-21
 Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 22/166 (13%)
 Frame = +2

Query: 35  MSHFKQIQAIIIRTCLIPHTTN---------------------LLNITSQNNLYIYNTII 151
           M   KQIQA +I T LI HT                       L N     N YI+NT+I
Sbjct: 171 MIQLKQIQAHMIITGLITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYIWNTMI 230

Query: 152 KHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIKACELFKGGVIVNGE-IHCRVCKLG 328
           + +S +K P + +  F +M+R+ +EM+ ++FVF +KA E F     + GE IHC + K+G
Sbjct: 231 RGFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFALKASEQFL--TALEGESIHCAIWKIG 288

Query: 329 FDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFSWTTIIDCY 466
           F   L+++N L+HFY  +G L  A  +FDE+  +DV SWT++ID Y
Sbjct: 289 FPCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGY 334



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 35/120 (29%), Positives = 60/120 (50%)
 Frame = +2

Query: 113 TSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIKACELFKGGVIV 292
           T   ++  + ++I  YS       ++ LF  ML   +E N+ T +  + AC   KG + +
Sbjct: 319 TPARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACSQ-KGDLSL 377

Query: 293 NGEIHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFSWTTIIDCYVQ 472
              IH  V +   +  + L N ++  Y K G L +A  +FD    KDVFSWT++++ Y +
Sbjct: 378 GKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAAREIFDSMGTKDVFSWTSMVNGYAK 437


>ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 49/122 (40%), Positives = 72/122 (59%)
 Frame = +2

Query: 113 TSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIKACELFKGGVIV 292
           T   N + +NT+IK Y K+  P +    FR+M+R   E +  +FVF +KAC  F    IV
Sbjct: 112 TELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQF-AEKIV 170

Query: 293 NGEIHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFSWTTIIDCYVQ 472
              +H  + K GFDS+L ++N L+  Y + G L  A  +FDES VKDV +WTT+I+ Y +
Sbjct: 171 GMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYAR 230

Query: 473 KS 478
            +
Sbjct: 231 NN 232



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
 Frame = +2

Query: 119 QNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRK-HLEMNKQTFVFTIKACELFKGGVIVN 295
           + N+  +N +I  YS++ QP  ++ LF  M+    L   + T V  + A     G + + 
Sbjct: 347 ERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQL-GCLEMG 405

Query: 296 GEIHCR-VCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFSWTTIIDCY 466
            EIHC  V K+G    L+L+N +M  Y K G + +A  LF     K++ SW ++I  Y
Sbjct: 406 QEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAY 463



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 33/135 (24%), Positives = 67/135 (49%)
 Frame = +2

Query: 68  IRTCLIPHTTNLLNITSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLEMNKQTFV 247
           + T  +     + + +S  ++  + T+I  Y+++     +I LF  ML   ++ N+ T +
Sbjct: 198 VETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMI 257

Query: 248 FTIKACELFKGGVIVNGEIHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVV 427
             + AC   KG   +   +H  + +      L L N ++  Y K G L++A  +F+    
Sbjct: 258 ALLSACSQ-KGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMER 316

Query: 428 KDVFSWTTIIDCYVQ 472
           +DVFSWT++++ Y +
Sbjct: 317 RDVFSWTSLLNGYAK 331


>ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 42/133 (31%), Positives = 72/133 (54%)
 Frame = +2

Query: 83  IPHTTNLLNITSQNNLYIYNTIIKHYSKSKQPKVSIFLFREMLRKHLEMNKQTFVFTIKA 262
           IP+  ++ +     N Y++NTII+ Y+ S  P+ ++ +F +ML   +  +K TF F +K+
Sbjct: 58  IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKS 117

Query: 263 CELFKGGVIVNGEIHCRVCKLGFDSELVLRNVLMHFYGKYGFLSSAELLFDESVVKDVFS 442
           C  F  GV    +IH  V K G   +L ++N L+H Y   G +  A  L D  + +DV S
Sbjct: 118 CGSF-SGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVS 176

Query: 443 WTTIIDCYVQKSI 481
           W  ++  Y ++ +
Sbjct: 177 WNALLSAYAERGL 189