BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035026
         (422 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15896.3| unnamed protein product [Vitis vinifera]              107   1e-21
ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
ref|XP_002884709.1| pentatricopeptide repeat-containing protein ...   103   1e-20
ref|NP_187518.1| pentatricopeptide repeat-containing protein [Ar...   102   4e-20
ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16

>emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  107 bits (267), Expect = 1e-21
 Identities = 52/90 (57%), Positives = 68/90 (75%)
 Frame = +2

Query: 152 PKHLLKLLKSTKDSHAALTLFDSVTHQNPNLKHTQFTFHHILGRLTDSKLITHIPRIVKL 331
           PK ++KLLKS K+ H+AL++FDSVT + P   HT + FHHIL RL D KL+ H+ RIV+L
Sbjct: 10  PKRVIKLLKSEKNPHSALSIFDSVT-RFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVEL 68

Query: 332 IQTQECKCTEDIALTVIKTYSVHYMSGHAL 421
           I+TQ+CKC ED+ALTVIK Y+ + M   AL
Sbjct: 69  IRTQKCKCPEDVALTVIKAYAKNSMPDQAL 98


>ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  107 bits (267), Expect = 1e-21
 Identities = 52/90 (57%), Positives = 68/90 (75%)
 Frame = +2

Query: 152 PKHLLKLLKSTKDSHAALTLFDSVTHQNPNLKHTQFTFHHILGRLTDSKLITHIPRIVKL 331
           PK ++KLLKS K+ H+AL++FDSVT + P   HT + FHHIL RL D KL+ H+ RIV+L
Sbjct: 10  PKRVIKLLKSEKNPHSALSIFDSVT-RFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVEL 68

Query: 332 IQTQECKCTEDIALTVIKTYSVHYMSGHAL 421
           I+TQ+CKC ED+ALTVIK Y+ + M   AL
Sbjct: 69  IRTQKCKCPEDVALTVIKAYAKNSMPDQAL 98


>ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330549|gb|EFH60968.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 689

 Score =  103 bits (257), Expect = 1e-20
 Identities = 49/90 (54%), Positives = 68/90 (75%)
 Frame = +2

Query: 152 PKHLLKLLKSTKDSHAALTLFDSVTHQNPNLKHTQFTFHHILGRLTDSKLITHIPRIVKL 331
           PKH+LKLLKS K+  AA  LFDS T ++P   H+   +HHIL RL++++++TH+ RIV+L
Sbjct: 10  PKHVLKLLKSEKNPRAAFALFDSAT-RHPGYAHSAVVYHHILRRLSEARMVTHVGRIVEL 68

Query: 332 IQTQECKCTEDIALTVIKTYSVHYMSGHAL 421
           I++QECKC ED+AL+VIKTY  + M   AL
Sbjct: 69  IRSQECKCDEDVALSVIKTYGKNSMPDRAL 98


>ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g09060 gi|5923671|gb|AAD56322.1|AC009326_9
           hypothetical protein [Arabidopsis thaliana]
           gi|332641194|gb|AEE74715.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  102 bits (253), Expect = 4e-20
 Identities = 48/90 (53%), Positives = 67/90 (74%)
 Frame = +2

Query: 152 PKHLLKLLKSTKDSHAALTLFDSVTHQNPNLKHTQFTFHHILGRLTDSKLITHIPRIVKL 331
           PKH+LKLLKS K+  AA  LFDS T ++P   H+   +HHIL RL++++++ H+ RIV+L
Sbjct: 10  PKHVLKLLKSEKNPRAAFALFDSAT-RHPGYAHSAVVYHHILRRLSETRMVNHVSRIVEL 68

Query: 332 IQTQECKCTEDIALTVIKTYSVHYMSGHAL 421
           I++QECKC ED+AL+VIKTY  + M   AL
Sbjct: 69  IRSQECKCDEDVALSVIKTYGKNSMPDQAL 98


>ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
           gi|449516585|ref|XP_004165327.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 46/92 (50%), Positives = 60/92 (65%)
 Frame = +2

Query: 146 ILPKHLLKLLKSTKDSHAALTLFDSVTHQNPNLKHTQFTFHHILGRLTDSKLITHIPRIV 325
           I P  +LKLLK+ K+ +AAL +FDS   Q+P   H  F FHHIL RL D KL+ H+ RIV
Sbjct: 8   ISPTLVLKLLKAEKNPNAALAIFDSAC-QHPGYAHPPFVFHHILRRLMDPKLVVHVGRIV 66

Query: 326 KLIQTQECKCTEDIALTVIKTYSVHYMSGHAL 421
            L++ Q C C+ED+AL+ IK Y+   M   AL
Sbjct: 67  DLMRAQRCTCSEDVALSAIKAYAKCSMPDQAL 98