BLASTX nr result
ID: Coptis21_contig00035026
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00035026 (422 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI15896.3| unnamed protein product [Vitis vinifera] 107 1e-21 ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containi... 107 1e-21 ref|XP_002884709.1| pentatricopeptide repeat-containing protein ... 103 1e-20 ref|NP_187518.1| pentatricopeptide repeat-containing protein [Ar... 102 4e-20 ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containi... 90 2e-16 >emb|CBI15896.3| unnamed protein product [Vitis vinifera] Length = 650 Score = 107 bits (267), Expect = 1e-21 Identities = 52/90 (57%), Positives = 68/90 (75%) Frame = +2 Query: 152 PKHLLKLLKSTKDSHAALTLFDSVTHQNPNLKHTQFTFHHILGRLTDSKLITHIPRIVKL 331 PK ++KLLKS K+ H+AL++FDSVT + P HT + FHHIL RL D KL+ H+ RIV+L Sbjct: 10 PKRVIKLLKSEKNPHSALSIFDSVT-RFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVEL 68 Query: 332 IQTQECKCTEDIALTVIKTYSVHYMSGHAL 421 I+TQ+CKC ED+ALTVIK Y+ + M AL Sbjct: 69 IRTQKCKCPEDVALTVIKAYAKNSMPDQAL 98 >ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Vitis vinifera] Length = 691 Score = 107 bits (267), Expect = 1e-21 Identities = 52/90 (57%), Positives = 68/90 (75%) Frame = +2 Query: 152 PKHLLKLLKSTKDSHAALTLFDSVTHQNPNLKHTQFTFHHILGRLTDSKLITHIPRIVKL 331 PK ++KLLKS K+ H+AL++FDSVT + P HT + FHHIL RL D KL+ H+ RIV+L Sbjct: 10 PKRVIKLLKSEKNPHSALSIFDSVT-RFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVEL 68 Query: 332 IQTQECKCTEDIALTVIKTYSVHYMSGHAL 421 I+TQ+CKC ED+ALTVIK Y+ + M AL Sbjct: 69 IRTQKCKCPEDVALTVIKAYAKNSMPDQAL 98 >ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 689 Score = 103 bits (257), Expect = 1e-20 Identities = 49/90 (54%), Positives = 68/90 (75%) Frame = +2 Query: 152 PKHLLKLLKSTKDSHAALTLFDSVTHQNPNLKHTQFTFHHILGRLTDSKLITHIPRIVKL 331 PKH+LKLLKS K+ AA LFDS T ++P H+ +HHIL RL++++++TH+ RIV+L Sbjct: 10 PKHVLKLLKSEKNPRAAFALFDSAT-RHPGYAHSAVVYHHILRRLSEARMVTHVGRIVEL 68 Query: 332 IQTQECKCTEDIALTVIKTYSVHYMSGHAL 421 I++QECKC ED+AL+VIKTY + M AL Sbjct: 69 IRSQECKCDEDVALSVIKTYGKNSMPDRAL 98 >ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana] gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 687 Score = 102 bits (253), Expect = 4e-20 Identities = 48/90 (53%), Positives = 67/90 (74%) Frame = +2 Query: 152 PKHLLKLLKSTKDSHAALTLFDSVTHQNPNLKHTQFTFHHILGRLTDSKLITHIPRIVKL 331 PKH+LKLLKS K+ AA LFDS T ++P H+ +HHIL RL++++++ H+ RIV+L Sbjct: 10 PKHVLKLLKSEKNPRAAFALFDSAT-RHPGYAHSAVVYHHILRRLSETRMVNHVSRIVEL 68 Query: 332 IQTQECKCTEDIALTVIKTYSVHYMSGHAL 421 I++QECKC ED+AL+VIKTY + M AL Sbjct: 69 IRSQECKCDEDVALSVIKTYGKNSMPDQAL 98 >ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060-like [Cucumis sativus] gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060-like [Cucumis sativus] Length = 701 Score = 89.7 bits (221), Expect = 2e-16 Identities = 46/92 (50%), Positives = 60/92 (65%) Frame = +2 Query: 146 ILPKHLLKLLKSTKDSHAALTLFDSVTHQNPNLKHTQFTFHHILGRLTDSKLITHIPRIV 325 I P +LKLLK+ K+ +AAL +FDS Q+P H F FHHIL RL D KL+ H+ RIV Sbjct: 8 ISPTLVLKLLKAEKNPNAALAIFDSAC-QHPGYAHPPFVFHHILRRLMDPKLVVHVGRIV 66 Query: 326 KLIQTQECKCTEDIALTVIKTYSVHYMSGHAL 421 L++ Q C C+ED+AL+ IK Y+ M AL Sbjct: 67 DLMRAQRCTCSEDVALSAIKAYAKCSMPDQAL 98