BLASTX nr result
ID: Coptis21_contig00035001
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00035001
(370 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containi... 119 2e-25
ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containi... 117 1e-24
ref|XP_003602250.1| Pentatricopeptide repeat-containing protein ... 115 4e-24
ref|XP_002525881.1| pentatricopeptide repeat-containing protein,... 114 8e-24
ref|XP_002514422.1| pentatricopeptide repeat-containing protein,... 108 6e-22
>ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial [Vitis vinifera]
Length = 817
Score = 119 bits (299), Expect = 2e-25
Identities = 59/120 (49%), Positives = 86/120 (71%)
Frame = -3
Query: 365 NVEMARDVFDLMDFKELTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYT 186
+++ A+ VFD++ + +TPDV TYT+M+NGYC+ +CL+EA ++ +DM+++G+KPDVITYT
Sbjct: 623 DMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYT 682
Query: 185 VLIDGIHKENRKRRHSSHNSEGTTGKLYDASTLLSEMNIMDITHDVVMYTVLIDRNCKAD 6
V++DG K N K S S+G+ + DAS SEM M I DVV YTVLID +CK +
Sbjct: 683 VVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTN 742
Score = 58.9 bits (141), Expect = 4e-07
Identities = 36/105 (34%), Positives = 57/105 (54%)
Frame = -3
Query: 317 LTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYTVLIDGIHKENRKRRHS 138
+ PDV YT++++ +CK + LQ+A NL D+M +GL+PD++TYT L+
Sbjct: 724 IKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALL------------- 770
Query: 137 SHNSEGTTGKLYDASTLLSEMNIMDITHDVVMYTVLIDRNCKADK 3
+S + G + A TL++EM+ I D +VL KA K
Sbjct: 771 --SSCCSRGDMDRAITLVNEMSFKGIEPDSRAMSVLHRGILKARK 813
Score = 57.8 bits (138), Expect = 9e-07
Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 20/139 (14%)
Frame = -3
Query: 362 VEMARDVFDLMDFKELTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYTV 183
VE A ++ + M + ++ DV YT ++ GYC L +A N+ ++M+++G++PD++TY +
Sbjct: 418 VEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNI 477
Query: 182 LIDGIHKENRKR----------------RHSSHNS--EG--TTGKLYDASTLLSEMNIMD 63
L+ G + K+ ++HN EG GK+ +A L+ +
Sbjct: 478 LVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKC 537
Query: 62 ITHDVVMYTVLIDRNCKAD 6
+ + Y+ ++D CKA+
Sbjct: 538 LEN----YSAMVDGYCKAN 552
>ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial-like [Glycine max]
Length = 819
Score = 117 bits (293), Expect = 1e-24
Identities = 62/120 (51%), Positives = 83/120 (69%)
Frame = -3
Query: 365 NVEMARDVFDLMDFKELTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYT 186
+++ AR +FD+ + TPDV TYTIM+N YC+ +CLQEA +L DM+++G+KPDVIT+T
Sbjct: 626 DMKNARTLFDVFVHRGFTPDVVTYTIMINSYCRMNCLQEAHDLFQDMKRRGIKPDVITFT 685
Query: 185 VLIDGIHKENRKRRHSSHNSEGTTGKLYDASTLLSEMNIMDITHDVVMYTVLIDRNCKAD 6
VL+DG KE +R SSH TT LY ST+L +M M I DVV YTVL+D + K D
Sbjct: 686 VLLDGSLKEYLGKRFSSHGKRKTT-SLY-VSTILRDMEQMKINPDVVCYTVLMDGHMKTD 743
Score = 62.0 bits (149), Expect = 5e-08
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = -3
Query: 362 VEMARDVFDLMDFKELTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYTV 183
VE A ++ + M K L DVK YT ++NGYC L A N+ +M++KGLKPD++TY V
Sbjct: 421 VEDAVEMVEEMKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFKEMKEKGLKPDIVTYNV 480
Query: 182 LIDGIHKENRKR 147
L G+ + R
Sbjct: 481 LAAGLSRNGHAR 492
Score = 61.6 bits (148), Expect = 6e-08
Identities = 38/110 (34%), Positives = 57/110 (51%)
Frame = -3
Query: 332 MDFKELTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYTVLIDGIHKENR 153
M+ ++ PDV YT++M+G+ K Q+A +L D M + GL+PD ITYT L+ G+
Sbjct: 720 MEQMKINPDVVCYTVLMDGHMKTDNFQQAVSLFDKMIESGLEPDTITYTALVSGLCNR-- 777
Query: 152 KRRHSSHNSEGTTGKLYDASTLLSEMNIMDITHDVVMYTVLIDRNCKADK 3
G + A TLL+EM+ +T DV + + L KA K
Sbjct: 778 -------------GHVEKAVTLLNEMSSKGMTPDVHIISALKRGIIKARK 814
>ref|XP_003602250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491298|gb|AES72501.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 946
Score = 115 bits (288), Expect = 4e-24
Identities = 59/121 (48%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Frame = -3
Query: 365 NVEMARDVFDLMDFKELTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYT 186
N++ AR +FD + TPDV TYTIM+ YC +CLQEA +L DM+ +G+KPDVITYT
Sbjct: 600 NMQRARSLFDFFLGRGFTPDVVTYTIMIKSYCTMNCLQEAHDLFQDMKSRGIKPDVITYT 659
Query: 185 VLIDGIHKENRKRRH-SSHNSEGTTGKLYDASTLLSEMNIMDITHDVVMYTVLIDRNCKA 9
VL+DG K+ R + H SS + +G YD ST+ +M +++ DVV+YTVLID + K
Sbjct: 660 VLLDGKSKQARSKEHFSSQHGKGKDAP-YDVSTIWRDMKDREVSPDVVIYTVLIDGHIKV 718
Query: 8 D 6
D
Sbjct: 719 D 719
>ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223534795|gb|EEF36485.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 913
Score = 114 bits (285), Expect = 8e-24
Identities = 52/116 (44%), Positives = 82/116 (70%)
Frame = -3
Query: 353 ARDVFDLMDFKELTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYTVLID 174
A+ VFD++ + TPD+ YTIM+ YC+ +CL+EA +L DM+++G+KPD++T+TVL+D
Sbjct: 635 AQSVFDMLLKRGWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFTVLLD 694
Query: 173 GIHKENRKRRHSSHNSEGTTGKLYDASTLLSEMNIMDITHDVVMYTVLIDRNCKAD 6
G HK + K+ +S+ N++G ++DA + +EM +I DV+ YTVLID CK D
Sbjct: 695 GHHKAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVD 750
Score = 64.3 bits (155), Expect = 1e-08
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Frame = -3
Query: 347 DVFDL------MDFKELTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYT 186
D+FD M E+ PDV YT++++GYCK L +A + D+M ++GL+PD+ITYT
Sbjct: 716 DIFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYT 775
Query: 185 VLIDGIHKENRKRRHSSHNSEGTTGKLYDASTLLSEMNIMDITHD-----VVMYTVLIDR 21
L+ G + G + A LL +M++ I+ D +++ +L R
Sbjct: 776 ALLSGCCQR---------------GDVDRAVNLLDQMSLKGISPDTRTMSALLHGILKTR 820
Query: 20 NCKA 9
C A
Sbjct: 821 QCSA 824
Score = 55.8 bits (133), Expect = 3e-06
Identities = 32/120 (26%), Positives = 57/120 (47%)
Frame = -3
Query: 362 VEMARDVFDLMDFKELTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYTV 183
+E A + D M K++ DV YT ++NGYC + +A + ++M++ G++ DV+TY V
Sbjct: 424 LEEAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEMRENGIEIDVVTYDV 483
Query: 182 LIDGIHKENRKRRHSSHNSEGTTGKLYDASTLLSEMNIMDITHDVVMYTVLIDRNCKADK 3
L+ G + G +A LL M + + + Y V+++ C K
Sbjct: 484 LVSGFCR---------------NGLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGK 528
>ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223546418|gb|EEF47918.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 809
Score = 108 bits (269), Expect = 6e-22
Identities = 54/119 (45%), Positives = 83/119 (69%)
Frame = -3
Query: 362 VEMARDVFDLMDFKELTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYTV 183
+E A+ VF+++ + L PDV TYTIM+NGYC+ + ++EA ++L DM+ +G++PDVITYTV
Sbjct: 616 MEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTV 675
Query: 182 LIDGIHKENRKRRHSSHNSEGTTGKLYDASTLLSEMNIMDITHDVVMYTVLIDRNCKAD 6
L++ K + + SS ++ + + D S L SEM MDI DV+ YTVLID++CK +
Sbjct: 676 LLNNCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDIKPDVICYTVLIDKHCKTN 734
Score = 54.3 bits (129), Expect(2) = 6e-06
Identities = 21/50 (42%), Positives = 36/50 (72%)
Frame = -3
Query: 320 ELTPDVKTYTIMMNGYCKAHCLQEACNLLDDMQKKGLKPDVITYTVLIDG 171
++ PDV YT++++ +CK + +Q+A NL ++M +GL PD +TYT L+ G
Sbjct: 715 DIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSG 764
Score = 20.4 bits (41), Expect(2) = 6e-06
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -1
Query: 118 PQGNCMMLLHCLVK 77
P + M +LHC++K
Sbjct: 788 PDAHTMSVLHCILK 801