BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034941
         (405 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15198.3| unnamed protein product [Vitis vinifera]               88   8e-16
ref|XP_002281821.2| PREDICTED: putative pentatricopeptide repeat...    85   7e-15
ref|XP_003522318.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...    70   2e-10
ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containi...    64   1e-08
emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]    64   1e-08

>emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 44/110 (40%), Positives = 69/110 (62%), Gaps = 6/110 (5%)
 Frame = +3

Query: 93  TRPCFILTRKPHLAYLHSRPK------LKSQNLNTLLKDYIKSNSTRNVLLLFKSLQKKT 254
           + PC  + R   L   +++PK      LK    N  LK Y++S++T  VLL F+ L +K 
Sbjct: 566 SEPCICVIRVTKLFATNNQPKAHLHTHLKPPKSNQTLKRYLQSSNTSKVLLFFRILLRKN 625

Query: 255 ASIVDSFTLHFVLKACLIRSSETEGKQVHSVIVKLGFNTVIFVQTTLMKI 404
            S +DSF+L F LKAC ++SS  EGKQ+H++++  GF  +IF+QT+L+ +
Sbjct: 626 PSSIDSFSLMFALKACTLKSSLVEGKQMHALVINFGFEPIIFLQTSLISM 675


>ref|XP_002281821.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74400-like [Vitis vinifera]
          Length = 482

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 41/91 (45%), Positives = 63/91 (69%)
 Frame = +3

Query: 132 AYLHSRPKLKSQNLNTLLKDYIKSNSTRNVLLLFKSLQKKTASIVDSFTLHFVLKACLIR 311
           A+LH+   LK    N  LK Y++S++T  VLL F+ L +K  S +DSF+L F LKAC ++
Sbjct: 26  AHLHTH--LKPPKSNQTLKRYLQSSNTSKVLLFFRILLRKNPSSIDSFSLMFALKACTLK 83

Query: 312 SSETEGKQVHSVIVKLGFNTVIFVQTTLMKI 404
           SS  EGKQ+H++++  GF  +IF+QT+L+ +
Sbjct: 84  SSLVEGKQMHALVINFGFEPIIFLQTSLISM 114


>ref|XP_003522318.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74400-like [Glycine max]
          Length = 333

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
 Frame = +3

Query: 156 LKSQNLNTLLKDYIKSNSTRNVLLLFKSLQKK--TASIVDSFTLHFVLKACLIRSSETEG 329
           LK    N  LK +++ N    VLLLF+   +K  T +++DS++L + LKAC  + S T+G
Sbjct: 29  LKPPKANQTLKKHLECNIHTKVLLLFRFFLRKRPTLNLIDSYSLLYALKACNHKHSSTQG 88

Query: 330 KQVHSVIVKLGFNTVIFVQTTLMK 401
           KQ+H++I+K G+ T++ +Q TL+K
Sbjct: 89  KQLHALIIKFGYQTIVQLQITLLK 112


>ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 529

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 30/83 (36%), Positives = 51/83 (61%)
 Frame = +3

Query: 156 LKSQNLNTLLKDYIKSNSTRNVLLLFKSLQKKTASIVDSFTLHFVLKACLIRSSETEGKQ 335
           L +   NT+++ Y++ N     +L++  ++KK    VD++TL FV+KAC +R    EG+Q
Sbjct: 42  LDTYTWNTIIRGYLEGNDPEEAILVYNHVRKKGLK-VDTYTLVFVIKACGLRPVILEGEQ 100

Query: 336 VHSVIVKLGFNTVIFVQTTLMKI 404
           +H  I KLGF   + +QT L+ +
Sbjct: 101 IHGQIFKLGFEFEVIIQTALLNL 123


>emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
          Length = 529

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 30/83 (36%), Positives = 51/83 (61%)
 Frame = +3

Query: 156 LKSQNLNTLLKDYIKSNSTRNVLLLFKSLQKKTASIVDSFTLHFVLKACLIRSSETEGKQ 335
           L +   NT+++ Y++ N     +L++  ++KK    VD++TL FV+KAC +R    EG+Q
Sbjct: 42  LDTYTWNTIIRGYLEGNDPEEAILIYNHVRKKGLK-VDTYTLVFVIKACGLRPVILEGEQ 100

Query: 336 VHSVIVKLGFNTVIFVQTTLMKI 404
           +H  I KLGF   + +QT L+ +
Sbjct: 101 IHGQIFKLGFEFEVIIQTALLSM 123