BLASTX nr result

ID: Coptis21_contig00034929 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034929
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632043.1| PREDICTED: LOW QUALITY PROTEIN: Werner Syndr...   112   3e-23
ref|XP_004171094.1| PREDICTED: Werner Syndrome-like exonuclease-...   110   9e-23
ref|XP_004133981.1| PREDICTED: Werner Syndrome-like exonuclease-...   110   9e-23
gb|AFK40115.1| unknown [Lotus japonicus]                              110   2e-22
ref|XP_002328909.1| predicted protein [Populus trichocarpa] gi|2...   108   6e-22

>ref|XP_003632043.1| PREDICTED: LOW QUALITY PROTEIN: Werner Syndrome-like
           exonuclease-like [Vitis vinifera]
          Length = 331

 Score =  112 bits (280), Expect = 3e-23
 Identities = 53/88 (60%), Positives = 65/88 (73%)
 Frame = -3

Query: 279 PTYKFGGRIVYCRTYSEVEKATVELMEHIQDKQKNVDRFTIGFDIEWKPTFKRGEVPRKA 100
           P   FGG IVY RT +EVEKAT EL++ ++ K+K + +  +GFDIEW+PTF++G    KA
Sbjct: 115 PKINFGGHIVYSRTVTEVEKATAELLKIVETKKKELGQAILGFDIEWRPTFRKGVSQGKA 174

Query: 99  AVMQICGDMSCCYVFHIIHSGIPLNLQS 16
           AVMQICG  S CYV HIIHSGIP NL S
Sbjct: 175 AVMQICGGNSHCYVMHIIHSGIPRNLXS 202


>ref|XP_004171094.1| PREDICTED: Werner Syndrome-like exonuclease-like [Cucumis sativus]
          Length = 314

 Score =  110 bits (276), Expect = 9e-23
 Identities = 51/89 (57%), Positives = 68/89 (76%)
 Frame = -3

Query: 282 YPTYKFGGRIVYCRTYSEVEKATVELMEHIQDKQKNVDRFTIGFDIEWKPTFKRGEVPRK 103
           +P   +GGRI+Y RT SEV++A+ EL + I   +K +D+ TIGFDIEW+P+FKRG  P K
Sbjct: 108 FPALNYGGRIIYSRTVSEVDRASRELAKKINSTRKAMDQITIGFDIEWRPSFKRGVPPGK 167

Query: 102 AAVMQICGDMSCCYVFHIIHSGIPLNLQS 16
           AAVMQ+C + S C+V HIIHSGIP +LQ+
Sbjct: 168 AAVMQLCLENSECHVMHIIHSGIPQSLQA 196


>ref|XP_004133981.1| PREDICTED: Werner Syndrome-like exonuclease-like [Cucumis sativus]
          Length = 314

 Score =  110 bits (276), Expect = 9e-23
 Identities = 51/89 (57%), Positives = 68/89 (76%)
 Frame = -3

Query: 282 YPTYKFGGRIVYCRTYSEVEKATVELMEHIQDKQKNVDRFTIGFDIEWKPTFKRGEVPRK 103
           +P   +GGRI+Y RT SEV++A+ EL + I   +K +D+ TIGFDIEW+P+FKRG  P K
Sbjct: 108 FPALNYGGRIIYSRTVSEVDRASRELAKKINSTRKAMDQITIGFDIEWRPSFKRGVPPGK 167

Query: 102 AAVMQICGDMSCCYVFHIIHSGIPLNLQS 16
           AAVMQ+C + S C+V HIIHSGIP +LQ+
Sbjct: 168 AAVMQLCLENSECHVMHIIHSGIPQSLQA 196


>gb|AFK40115.1| unknown [Lotus japonicus]
          Length = 209

 Score =  110 bits (274), Expect = 2e-22
 Identities = 48/87 (55%), Positives = 65/87 (74%)
 Frame = -3

Query: 279 PTYKFGGRIVYCRTYSEVEKATVELMEHIQDKQKNVDRFTIGFDIEWKPTFKRGEVPRKA 100
           P  KF G+I Y R++ +V+KA  +L+E +++K++ + R  IGFDIEW+P+F RG  P K 
Sbjct: 4   PVMKFSGQITYSRSFDDVQKAVTKLLEFVEEKKRAMMRIAIGFDIEWRPSFVRGVPPGKV 63

Query: 99  AVMQICGDMSCCYVFHIIHSGIPLNLQ 19
           AVMQICGD S C+V H+IHSGIP NLQ
Sbjct: 64  AVMQICGDTSHCHVLHLIHSGIPQNLQ 90


>ref|XP_002328909.1| predicted protein [Populus trichocarpa] gi|222839339|gb|EEE77676.1|
           predicted protein [Populus trichocarpa]
          Length = 323

 Score =  108 bits (269), Expect = 6e-22
 Identities = 50/88 (56%), Positives = 65/88 (73%)
 Frame = -3

Query: 282 YPTYKFGGRIVYCRTYSEVEKATVELMEHIQDKQKNVDRFTIGFDIEWKPTFKRGEVPRK 103
           YP  KFGG+I+Y RT  EVEKA  EL++ ++ +++ +DR  IGFDIEWKP+F  G +P K
Sbjct: 111 YPAMKFGGQILYSRTSIEVEKAARELLQSLEAEKREMDRVIIGFDIEWKPSFTTGVLPGK 170

Query: 102 AAVMQICGDMSCCYVFHIIHSGIPLNLQ 19
           AAVMQIC + S C+V HI HSGI  +LQ
Sbjct: 171 AAVMQICANTSLCHVMHIFHSGITPSLQ 198


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