BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034924
         (383 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    77   1e-12
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    73   3e-11
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    65   4e-09
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    65   4e-09
ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula] g...    63   2e-08

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
 Frame = +2

Query: 2   DGSSIGNPGCGGAGEVFRDNQNKVLGVLAQELGVVTDYEAEY*AILLAVECAVRKNWRNI 181
           DGS+ G P CG  G VFR+ Q   LG  AQ +G  T ++AE  A + A+E ++  N R+I
Sbjct: 16  DGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEYNLRDI 75

Query: 182 WIEVK*LNCSGAISKWSLNGVNIPWMIRAQWTRATSLLTSWR--LTHIYGEAHFGADA 349
           W+E      S  + K   +  ++PW +R +W    +L    +   THI+ E + GAD+
Sbjct: 76  WLETD----SKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAGADS 129


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 43/118 (36%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
 Frame = +2

Query: 2   DGSSIGNPGCGGAGEVFRDNQNKVLGVLAQELGVVTDYEAEY*AILLAVECAVRKNWRNI 181
           DGS +G+P CG  G +FR +Q    G  AQ +G  T  EAEY A + A+E A   +  NI
Sbjct: 258 DGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNI 317

Query: 182 WIEVK*LNCSGAISKWSLNGVNIPWMIRAQWTRATSLLTSWR--LTHIYGEAHFGADA 349
           WIE   +N    I  +  N   +PW +  +W        S R   TH+  E +  ADA
Sbjct: 318 WIETDSVN---VIRAFHFN-TGVPWKMHIRWHNCLLFCRSIRSLCTHVNREGNLVADA 371


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
 Frame = +2

Query: 2   DGSSIGNPGCGGAGEVFRDNQNKVLGVLAQELGVVTDYEAEY*AILLAVECAVRKNWRNI 181
           DGSS+G   CG  G V RD+ +  LG ++  +G  T  EAE+ A ++A+E A      ++
Sbjct: 229 DGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHV 288

Query: 182 WIEVK*LNCSGAISKWSLNGVNIPWMIRAQWTRATSLL--TSWRLTHIYGEAHFGADA 349
            +E   L    A +K    G+ +PW +RA+W          S    HI  E +  ADA
Sbjct: 289 CLETDSLKVVNAFNK----GLGVPWQMRARWQNCWDFCDSISCSCVHILREGNMVADA 342


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
 Frame = +2

Query: 2   DGSSIGNPGCGGAGEVFRDNQNKVLGVLAQELGVVTDYEAEY*AILLAVECAVRKNWRNI 181
           DGSS+G   CG  G V RD+ +  LG ++  +G  T  EAE+ A ++A+E A      ++
Sbjct: 66  DGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHV 125

Query: 182 WIEVK*LNCSGAISKWSLNGVNIPWMIRAQWTRATSLL--TSWRLTHIYGEAHFGADA 349
            +E   L    A +K    G+ +PW +RA+W          S    HI  E +  ADA
Sbjct: 126 CLETDSLKVVNAFNK----GLGVPWQMRARWQNCWDFCDSISCSCVHILREGNMVADA 179


>ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula]
           gi|355506707|gb|AES87849.1| GDSL esterase/lipase
           [Medicago truncatula]
          Length = 1004

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 45/118 (38%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
 Frame = +2

Query: 2   DGSSIG-NPGCGGAGEVFRDNQNKVLGVLAQELGVVTDYEAEY*AILLAVECAVRKNWRN 178
           DG+S   +  CGG   VFRD     L   A+ LG  + Y+ E  AI+  VE A ++NWRN
Sbjct: 238 DGASTATSSSCGG---VFRDQNANFLSCFAKNLGGGSAYQPELAAIMRVVEIAYQRNWRN 294

Query: 179 IWIEVK*LNCSGAISKWSLNGVNIPWMIRAQWTRATSLL--TSWRLTHIYGEAHFGAD 346
           IWIE        A  K S+    IP  +R +W     LL   ++ +THIY E +  AD
Sbjct: 295 IWIESDSALVVMAFKKMSM----IPCRLRNRWINCRKLLCRMNFVITHIYREDNRCAD 348