BLASTX nr result

ID: Coptis21_contig00034884 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034884
         (446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519341.1| Chromatin remodelling complex ATPase chain i...   206   2e-51
ref|XP_002269671.1| PREDICTED: SWI/SNF-related matrix-associated...   202   2e-50
ref|XP_003541328.1| PREDICTED: SWI/SNF-related matrix-associated...   197   7e-49
ref|XP_003550580.1| PREDICTED: SWI/SNF-related matrix-associated...   194   8e-48
ref|XP_004160655.1| PREDICTED: SWI/SNF-related matrix-associated...   191   4e-47

>ref|XP_002519341.1| Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus
           communis] gi|223541656|gb|EEF43205.1| Chromatin
           remodelling complex ATPase chain isw-1, putative
           [Ricinus communis]
          Length = 674

 Score =  206 bits (523), Expect = 2e-51
 Identities = 102/121 (84%), Positives = 111/121 (91%)
 Frame = +1

Query: 1   RFVLQHGGRVLIADEMGLGKTLQAIAVTACIRDSWPVLVLTPSSLRLQWATMIQQWLNIP 180
           RFVLQHGGR LIADEMGLGKTLQAIAVTAC+RD WPVL+LTPSSLRL WA+MIQQWL+IP
Sbjct: 191 RFVLQHGGRALIADEMGLGKTLQAIAVTACLRDFWPVLILTPSSLRLHWASMIQQWLHIP 250

Query: 181 STDILVVLSQCSGSNRGGFTIVHSNAKSTIHLDGVFNIISYDSVPKLEQLLMASEFKVGI 360
           S+DILVVLSQ SGSNRGGFTIV SN K +IHLDG+FNIISYD VPKL+ +LMASEFKV I
Sbjct: 251 SSDILVVLSQWSGSNRGGFTIVSSNTKGSIHLDGLFNIISYDVVPKLQNVLMASEFKVVI 310

Query: 361 A 363
           A
Sbjct: 311 A 311


>ref|XP_002269671.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1 [Vitis
           vinifera] gi|297736823|emb|CBI26024.3| unnamed protein
           product [Vitis vinifera]
          Length = 677

 Score =  202 bits (515), Expect = 2e-50
 Identities = 102/121 (84%), Positives = 109/121 (90%)
 Frame = +1

Query: 1   RFVLQHGGRVLIADEMGLGKTLQAIAVTACIRDSWPVLVLTPSSLRLQWATMIQQWLNIP 180
           RFVLQHGGRVL+ADEMGLGKTLQAIAVT C+RDSWPVLVLTPSSLRL WA+MIQQWLNIP
Sbjct: 194 RFVLQHGGRVLLADEMGLGKTLQAIAVTTCVRDSWPVLVLTPSSLRLHWASMIQQWLNIP 253

Query: 181 STDILVVLSQCSGSNRGGFTIVHSNAKSTIHLDGVFNIISYDSVPKLEQLLMASEFKVGI 360
           S+DILVVLSQ SGSNRGGF IV SN K TIHLDGVFNIISYD V KL+++L  SEFKV I
Sbjct: 254 SSDILVVLSQWSGSNRGGFRIVPSNTKGTIHLDGVFNIISYDVVLKLQKILAESEFKVVI 313

Query: 361 A 363
           A
Sbjct: 314 A 314


>ref|XP_003541328.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Glycine max]
          Length = 665

 Score =  197 bits (501), Expect = 7e-49
 Identities = 94/121 (77%), Positives = 109/121 (90%)
 Frame = +1

Query: 1   RFVLQHGGRVLIADEMGLGKTLQAIAVTACIRDSWPVLVLTPSSLRLQWATMIQQWLNIP 180
           RF+LQHGGRVL+ADEMGLGKTLQAIAV +C++DSWPVL++ PSSLRLQWA+MIQQWLNIP
Sbjct: 182 RFILQHGGRVLLADEMGLGKTLQAIAVASCVQDSWPVLIIAPSSLRLQWASMIQQWLNIP 241

Query: 181 STDILVVLSQCSGSNRGGFTIVHSNAKSTIHLDGVFNIISYDSVPKLEQLLMASEFKVGI 360
           S+DIL+VLSQ  GSNRGGF IV S+AKS+IHLDG+FNIISYD VPKL+ +LM   FKV I
Sbjct: 242 SSDILIVLSQNGGSNRGGFNIVSSSAKSSIHLDGLFNIISYDLVPKLQNMLMTCNFKVVI 301

Query: 361 A 363
           A
Sbjct: 302 A 302


>ref|XP_003550580.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Glycine max]
          Length = 751

 Score =  194 bits (492), Expect = 8e-48
 Identities = 93/121 (76%), Positives = 108/121 (89%)
 Frame = +1

Query: 1   RFVLQHGGRVLIADEMGLGKTLQAIAVTACIRDSWPVLVLTPSSLRLQWATMIQQWLNIP 180
           RF+LQHGGRVL+ADEMGLGKTLQAIAV +CI+D WPVL++ PSSLRLQWA+MIQQWLNIP
Sbjct: 245 RFILQHGGRVLLADEMGLGKTLQAIAVASCIQDLWPVLIIAPSSLRLQWASMIQQWLNIP 304

Query: 181 STDILVVLSQCSGSNRGGFTIVHSNAKSTIHLDGVFNIISYDSVPKLEQLLMASEFKVGI 360
           S+DIL+VLSQ  GSNRGGF IV S+AKS+I LDG+FNIISYD VPKL+ +LM  +FKV I
Sbjct: 305 SSDILIVLSQSGGSNRGGFNIVSSSAKSSIRLDGLFNIISYDLVPKLQNMLMTHDFKVVI 364

Query: 361 A 363
           A
Sbjct: 365 A 365


>ref|XP_004160655.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Cucumis sativus]
          Length = 725

 Score =  191 bits (486), Expect = 4e-47
 Identities = 92/121 (76%), Positives = 108/121 (89%)
 Frame = +1

Query: 1   RFVLQHGGRVLIADEMGLGKTLQAIAVTACIRDSWPVLVLTPSSLRLQWATMIQQWLNIP 180
           RF+LQHGGR L+ADEMGLGKTLQAIAV AC+R++WPVL+LTPSSLRL WA MIQQWL IP
Sbjct: 240 RFILQHGGRALLADEMGLGKTLQAIAVAACVREAWPVLILTPSSLRLHWAAMIQQWLKIP 299

Query: 181 STDILVVLSQCSGSNRGGFTIVHSNAKSTIHLDGVFNIISYDSVPKLEQLLMASEFKVGI 360
           S+DI VVLSQ  GSN+GGFTI+ S++KS++HLDG+FNIISYD V KL+ +LMASEFKV I
Sbjct: 300 SSDIHVVLSQYCGSNKGGFTILSSSSKSSLHLDGLFNIISYDVVQKLQNILMASEFKVVI 359

Query: 361 A 363
           A
Sbjct: 360 A 360


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